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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MTEEERSSALSEVSLRLLCHDDIDTVKHLCGDWFPIEYPDSWYRDITSNKKFFSLAATYRGAIVGMIVAEIKNRTKIHKE
DGDILASNFSVDTQVAYILSLGVVKEFRKHGIGSLLLESLKDHISTTAQDHCKAIYLHVLTTNNTAINFYENRDFKQHHY
LPYYYSIRGVLKDGFTYVLYINGGHPPWTILDYIQHLGSALASLSPCSIPH

The query sequence (length=211) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5hgz:A 211 211 1.0000 1.0000 1.0000 9.67e-160 5hh0:A, 5hh1:A, 5icv:A, 5icv:B, 5icw:A, 5icw:B, 5icw:C, 5icw:D
2 6th0:A 176 179 0.2370 0.2841 0.2793 6.94e-17 6tgx:A, 6tgx:B, 6th0:B
3 6z00:A 156 153 0.2417 0.3269 0.3333 9.82e-12 6yzz:A, 6z00:B
4 5c88:A 158 156 0.1896 0.2532 0.2564 4.30e-07 6ag4:A, 6ag5:A, 5c88:B, 4lx9:A, 4r3k:A, 4r3l:A, 2x7b:A
5 2ob0:C 166 147 0.1754 0.2229 0.2517 5.44e-07 2ob0:A, 2ob0:B, 6ppl:A, 2psw:A, 2psw:B, 2psw:C, 3tfy:A, 3tfy:B, 3tfy:C, 6wf3:A, 6wf3:B, 6wf3:C, 6wf3:D, 6wf3:E, 6wf3:F, 6wf5:A, 6wf5:B, 6wfg:A, 6wfg:C, 6wfg:E, 6wfk:A, 6wfk:B, 6wfk:C, 6wfn:A, 6wfo:A, 6wfo:B, 6wfo:C, 4x5k:A
6 4pv6:G 154 153 0.1848 0.2532 0.2549 1.51e-06 4pv6:C, 4pv6:I, 4pv6:F, 4pv6:A, 4pv6:H, 4pv6:J, 4pv6:E
7 7oju:A 214 189 0.2180 0.2150 0.2434 2.48e-05
8 7l1k:A 149 85 0.1327 0.1879 0.3294 8.48e-05
9 6ygb:A 159 84 0.1280 0.1698 0.3214 9.54e-05 6ygc:A, 6ygd:A
10 7mx2:A 152 70 0.1090 0.1513 0.3286 3.47e-04 7rb3:A
11 2cnm:A 151 87 0.1137 0.1589 0.2759 6.41e-04 2cnm:B, 2cnm:C, 2cns:A, 2cns:B, 2cns:C, 2cnt:A, 2cnt:B, 2cnt:C, 2cnt:D
12 6zmp:A 190 154 0.1754 0.1947 0.2403 6.61e-04 6zmp:B
13 5hmn:B 159 83 0.1280 0.1698 0.3253 0.008 5hmn:A, 5hmn:C, 5hmn:E, 5hmn:F
14 3ld2:B 162 77 0.0900 0.1173 0.2468 0.019 3ld2:A, 3ld2:C, 3ld2:D
15 6bfg:A 373 128 0.1469 0.0831 0.2422 0.029 2a7n:A, 2a7p:A, 2a85:A, 6bfg:B, 3giy:A, 1p4c:A, 1p5b:A
16 6c95:B 160 115 0.1517 0.2000 0.2783 0.038 6ppl:C, 6pw9:C
17 2b4b:B 170 60 0.0806 0.1000 0.2833 0.038 2b3v:A, 2b4b:A, 2b4d:A, 2b4d:B, 2b58:A, 3bj7:A, 3bj7:B, 3bj7:C, 3bj7:D, 3bj8:A, 3bj8:B, 3bj8:C, 3bj8:D, 2fxf:A, 2fxf:B, 2jev:A, 2jev:B
18 8g0l:A 158 145 0.1422 0.1899 0.2069 0.090 7stx:A, 6vp9:A
19 8wk0:N 542 44 0.0711 0.0277 0.3409 0.28
20 8wiv:D 602 44 0.0711 0.0249 0.3409 0.29 8wk0:D
21 8wiv:O 657 44 0.0711 0.0228 0.3409 0.29 8wiv:M, 8wiv:L, 8wj3:M, 8wj3:O, 8wj3:L, 8wk0:M, 8wk0:O, 8wk0:L
22 6bvc:A 154 121 0.1374 0.1883 0.2397 0.30 1bo4:A, 1bo4:B
23 4qvt:D 146 51 0.0806 0.1164 0.3333 0.36 2pdo:H, 2pdo:B, 4qvt:A, 4qvt:B, 4qvt:C, 4qvt:E, 4qvt:F, 4qvt:G, 4qvt:H
24 1ib1:E 179 103 0.1185 0.1397 0.2427 0.47 1cjw:A, 1ib1:F, 1ib1:G, 1ib1:H, 1kuv:A, 1kux:A, 1kuy:A, 1l0c:A
25 4ua3:B 193 66 0.0948 0.1036 0.3030 0.76 4ua3:A
26 3zj0:A 202 60 0.0758 0.0792 0.2667 1.3
27 6rcl:B 148 17 0.0474 0.0676 0.5882 1.8 6j7y:A, 6j7z:A, 6j80:A, 6rcn:B
28 2bei:A 156 56 0.0806 0.1090 0.3036 2.2 2q4v:A
29 6sty:A 198 17 0.0474 0.0505 0.5882 2.3 6j7y:B, 6j7z:B, 6j80:B, 6n6i:A, 6n6i:B, 6n6j:A, 6n6j:B, 6n6k:A, 6n6k:B, 6rcl:A, 6rcn:A, 6sty:B, 6sty:E
30 5iai:A 399 103 0.1327 0.0702 0.2718 3.5
31 5gcn:A 166 69 0.0711 0.0904 0.2174 3.9 1m1d:A, 1m1d:C, 1pu9:A, 1pua:A, 1q2c:A, 1q2d:A, 1qsn:A, 1qsr:A
32 5gmd:A 325 88 0.1090 0.0708 0.2614 5.4 5gme:A
33 3d8p:A 158 67 0.0853 0.1139 0.2687 6.7
34 8tux:ab 127 35 0.0521 0.0866 0.3143 7.2 2qux:A, 2qux:B, 2qux:E, 2qux:D, 2qux:G, 2qux:H, 2qux:J, 2qux:K, 2qux:M, 2qux:N, 2qux:P, 2qux:Q
35 6hd7:v 161 104 0.1280 0.1677 0.2596 7.4 4xnh:C, 4xpd:C, 4y49:C, 4y49:I, 4y49:O
36 5foe:B 435 56 0.0664 0.0322 0.2500 7.9 5foe:A
37 3pp9:A 176 60 0.0853 0.1023 0.3000 9.4 3pp9:B, 3pp9:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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