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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MTDIVYDVEGFRAFLPKETLRWIRHRELERKVGVVEKFSDRVGPIPVEIRRRRSQYGEFYHAGKGTTRIQARVSAAMECV
ERAAAEPREEIIERGPEGDKWTPAWYRTEPREWVEGVDLTTREPVYVPANEVFHPWLGDALPSHTNGLSAGRLREEAVIQ
GLLEVVERDSWSIVEYFRIHPPELEVHGELEELRRSLEREVGRVELRLLPSRVEGVYVVGAVTEAERVEEMVMGFGASPD
PEMAVLRALLEVAQGLSMARRGIESPPGKLTPERLKRLNRHWFEPEGTVEIDDLDRVITTGSLEKLTEELVERVAEAGLG
KVIEVDLTLENLDVPVVRVRVTGASEYVIDEARVGNMPEKPPG

The query sequence (length=363) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ci7:A 365 365 1.0000 0.9945 0.9945 0.0 6ci7:B, 6ci7:C, 6ci7:D, 6ci7:E, 6ci7:F, 6cib:A, 6cib:B, 6cib:C, 6cib:D, 6cib:E, 6cib:F
2 6peu:B 385 379 0.3471 0.3273 0.3325 2.71e-49 6pe3:A, 6peu:A, 6peu:C, 6peu:D
3 7u58:A 651 348 0.2534 0.1413 0.2644 2.54e-16 7u58:B
4 4v1t:B 753 305 0.2094 0.1009 0.2492 1.29e-12 4v1t:A, 4v1u:A, 4v1u:B, 4v1v:A, 4v1v:B
5 4bs9:A 691 182 0.1433 0.0753 0.2857 4.03e-12
6 4q86:B 583 238 0.1653 0.1029 0.2521 3.81e-05 4q85:A, 4q85:B, 4q85:C, 4q85:D, 4q85:E, 4q85:G, 4q85:H, 4q86:A, 4q86:C, 4q86:D, 4q86:E, 4q86:G, 4q86:H
7 7lhz:B 631 145 0.1047 0.0602 0.2621 0.019
8 7o4f:A 136 88 0.0716 0.1912 0.2955 0.028 7o4e:A, 7o4e:B, 7o4f:B, 7o4f:D, 7o4f:G
9 8fet:A 334 59 0.0551 0.0599 0.3390 0.30 8fet:B, 8feu:A, 8feu:B, 8fev:A, 8fev:B, 8few:A, 8few:B
10 7lhz:C 714 124 0.0882 0.0448 0.2581 0.74 5eix:A, 5eix:B, 7lhz:A, 6waa:B, 6waa:F
11 6waa:H 656 141 0.0964 0.0534 0.2482 2.2 6waa:D
12 5eix:J 679 141 0.0964 0.0515 0.2482 2.7 5eix:G, 7lhz:D
13 3zc0:B 191 54 0.0496 0.0942 0.3333 3.3 3zc0:A, 3zc0:E, 3zc0:F, 3zc0:I, 3zc0:C, 3zc0:D, 3zc0:G, 3zc0:H, 3zc0:J, 3zc0:K, 3zc0:L, 3zc1:B, 3zc1:C, 3zc1:D, 3zc1:F, 3zc1:G
14 7smc:C 347 104 0.0606 0.0634 0.2115 3.9 7smc:A, 7smd:A, 7sme:A, 7smf:A, 7smf:C, 4yoo:A, 4yos:A, 4yoz:A
15 7n4y:B 2455 40 0.0441 0.0065 0.4000 5.2 7n4y:A
16 3tkt:A 411 45 0.0358 0.0316 0.2889 6.4
17 1g3i:A 326 64 0.0523 0.0583 0.2969 7.5 1g3i:B, 1g3i:C, 1g3i:D, 1g3i:E, 1g3i:F, 1g3i:S, 1g3i:U, 1g3i:V, 1g3i:W, 1g3i:X, 1kyi:A, 1kyi:B, 1kyi:C, 1kyi:D, 1kyi:E, 1kyi:F, 1kyi:S, 1kyi:T, 1kyi:U, 1kyi:V, 1kyi:W, 1kyi:X
18 8xku:C 921 114 0.0992 0.0391 0.3158 9.2 8xkv:C
19 5lx2:A 235 56 0.0661 0.1021 0.4286 9.9 6qk8:A, 6qk8:C, 6qk8:D, 6qk8:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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