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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MTDFQKQFFARLHIEEKDTVSFEDLSNIMYAMAQTVPFENLNILEKNFKEISKENLKEKILVNNRGGLCYELNPTMYYFL
KDSGFDVHLVSGTVYNAANSIWAVDSGHIATVLTHHNELYLIEVGFGSYLPLAPVPFLGEVIHSATGDYRIRKEMTEKGN
YILEMRKDDWTLGYAFYIEEVDEEKANTAQKIIVEHEGSPFNKVPLIVKLTEDGHASLTKDSLTVAKNGKKTKETVTDMQ
YTNLLHSKFGITL

The query sequence (length=253) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4dmo:A 253 253 1.0000 1.0000 1.0000 0.0 4dmo:B
2 3lnb:A 252 252 0.5138 0.5159 0.5159 9.43e-92
3 1w6f:A 273 253 0.2490 0.2308 0.2490 5.20e-15 1w6f:B, 1w6f:C, 1w6f:D
4 4b55:A 273 250 0.2372 0.2198 0.2400 2.18e-14 4c5p:A, 3ltw:A, 2vfc:A, 2vfc:B
5 8k56:B 281 223 0.2292 0.2064 0.2601 5.89e-11 8k56:A
6 2pfr:A 290 122 0.1304 0.1138 0.2705 2.32e-10 2pfr:B
7 4nv7:B 270 250 0.2095 0.1963 0.2120 4.14e-09 4nv7:A
8 8osv:A 248 248 0.2055 0.2097 0.2097 6.32e-08 8oom:A, 8osz:A
9 6v4x:I 510 60 0.0672 0.0333 0.2833 0.94
10 7eld:A 1137 50 0.0632 0.0141 0.3200 1.8 7ele:A
11 6hpd:A 955 81 0.0751 0.0199 0.2346 2.9
12 7pfo:5 605 99 0.1146 0.0479 0.2929 4.0 8b9d:5
13 7w1y:5 710 99 0.1146 0.0408 0.2929 4.2 7plo:5, 7w1y:D
14 6xtx:5 577 99 0.1146 0.0503 0.2929 4.3 6xty:5
15 2klh:A 152 68 0.0751 0.1250 0.2794 4.6 4fyh:D, 4fyi:B, 4fyi:D, 4fyk:A, 4fyk:C, 2klh:B, 4kxl:A, 4kxl:C, 4kxl:D, 4kxm:A, 4kxm:B, 4kxm:C, 4kxm:D, 4kxn:A, 4kxn:D, 4p5d:C, 4p5d:A
16 3vti:C 305 82 0.0830 0.0689 0.2561 7.2 3vti:D
17 4ip4:A 421 21 0.0395 0.0238 0.4762 7.3 4ip4:B, 4ip5:A, 4ip5:B
18 3ug7:A 317 74 0.0672 0.0536 0.2297 8.7 3ug6:A, 3ug6:B, 3ug6:C, 3ug6:D, 3ug7:B, 3ug7:C, 3ug7:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218