Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MTAVEFIEPLTHEEGVSQATKLFVDTYGAAPEGVWAAPGRVNLIGEHTDYNAGLCLPIALPHRTFIALKPREDTKVRVVS
GVAPDKVAEADLDGLKARGVDGWSAYPTGVAWALRQAGFDKVKGFDAAFVSCVPLGSGLSSSAAMTCSTALALDDVYGLG
YGDSDAGRVTLINAAIKSENEMAGASTGGLDQNASMRCTEGHALLLDCRPELTPLENVSQQEFDLDKYNLELLVVDTQAP
HQLNDGQYAQRRATCEEAAKILGVANLRVTADGISKADDQFQALKETLDALPDETMKKRVRHVVTEIERVRSFVRAFAQG
DIKAAGRLFNASHDSLAADYEVTVPELDIAVDVARKNGAYGARMTGGGFGGSIIALVDKGQGHEIAQKIADRFEKEGFNA
PRALPAFAAASASREA

The query sequence (length=416) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6teq:A 418 416 1.0000 0.9952 1.0000 0.0 6tep:A, 6tep:D, 6tep:C, 6tep:B, 6teq:B, 6teq:C, 6teq:D, 6ter:A, 6ter:B, 6ter:C, 6ter:D
2 6q3x:A 393 392 0.3413 0.3613 0.3622 1.76e-62 6gr2:A, 6gr2:B, 6gr2:C, 6gr2:D, 6gr2:E, 6gr2:F, 6gr2:G, 6gr2:H, 7ozx:A, 7ozx:B, 7ozx:C, 6q3w:A, 6q3w:B, 6q3w:C, 6q3x:B, 6q8z:A, 6q8z:B, 6q8z:C, 6q90:A, 6q90:B, 6q90:C, 6q90:D, 6q91:A, 6q91:B, 6q91:C, 6qje:A, 6qje:B, 6qje:C, 7rcl:A, 7rcl:B, 7rcl:C, 7rcl:D, 7rcm:A, 7rcm:B, 7s49:A, 7s49:B, 7s4c:A, 7s4c:B, 1wuu:A, 1wuu:B, 1wuu:C, 1wuu:D, 6zfh:A, 6zfh:B, 6zfh:C, 6zfh:D, 6zfh:E, 6zfh:F, 6zfh:G, 6zfh:H, 6zgv:A, 6zgv:B, 6zgv:E, 6zgv:D, 6zgw:A, 6zgw:B, 6zgw:E, 6zgw:D, 6zgx:A, 6zgx:B, 6zgx:D, 6zgx:E, 6zgy:A, 6zgy:B, 6zgy:E, 6zgz:A, 6zgz:B, 6zgz:E, 6zgz:D, 6zh0:A, 6zh0:B, 6zh0:E, 6zh0:D
3 1pie:A 388 368 0.3245 0.3479 0.3668 2.42e-54
4 6q91:D 360 374 0.3221 0.3722 0.3583 3.50e-54 6qje:D
5 2dei:A 350 362 0.2885 0.3429 0.3315 4.73e-48 2dej:A
6 1s4e:F 351 357 0.2861 0.3390 0.3333 8.37e-46 1s4e:A, 1s4e:B, 1s4e:C, 1s4e:D, 1s4e:E, 1s4e:H, 1s4e:I
7 2aj4:A 509 481 0.3413 0.2790 0.2952 8.24e-28 2aj4:B
8 2a2d:A 448 407 0.2692 0.2500 0.2752 2.84e-25 2a2c:A
9 1s4e:G 255 147 0.1226 0.2000 0.3469 3.34e-14
10 1s4e:G 255 21 0.0337 0.0549 0.6667 0.010
11 3v2u:C 516 230 0.1683 0.1357 0.3043 9.08e-13 3v2u:D
12 3v2u:C 516 155 0.1010 0.0814 0.2710 9.33e-10 3v2u:D
13 2oi2:A 285 82 0.0769 0.1123 0.3902 1.39e-07
14 2hfu:A 326 61 0.0601 0.0767 0.4098 1.60e-05
15 4hac:A 312 82 0.0673 0.0897 0.3415 1.20e-04 4hac:B, 6mde:A, 6mdf:A, 6mdf:B
16 4hac:A 312 126 0.0769 0.1026 0.2540 0.003 4hac:B, 6mde:A, 6mdf:A, 6mdf:B
17 8teb:A 306 119 0.0793 0.1078 0.2773 0.002
18 8teb:A 306 114 0.0745 0.1013 0.2719 0.008
19 2r42:A 383 43 0.0433 0.0470 0.4186 0.005 1kvk:A
20 4n3o:B 314 99 0.0649 0.0860 0.2727 1.7
21 6ght:A 263 73 0.0553 0.0875 0.3151 5.6 6emn:A, 5me4:A
22 6bxo:A 321 79 0.0649 0.0841 0.3418 7.0 6bxm:A, 6bxm:B, 6bxn:B, 6bxo:B
23 7kmq:B 754 60 0.0529 0.0292 0.3667 8.2 7kmq:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218