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BioLiP
>protein
MTAESMLANGAFIMIGLTLLGLAWGFVIIKLQGSEE

The query sequence (length=36) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7zxy:F 36 36 1.0000 1.0000 1.0000 3.54e-19 7r0w:N, 7r0w:F, 7zxy:N
2 1q90:M 34 26 0.3333 0.3529 0.4615 0.008
3 7zyv:F 37 26 0.3333 0.3243 0.4615 0.018 7qrm:F, 7qrm:N, 6rqf:N, 6rqf:F, 7zyv:N
4 2d2c:F 35 36 0.3611 0.3714 0.3611 5.3 2d2c:S, 2e74:F, 2e75:F, 2e76:F, 4h0l:F, 4h13:F, 4i7z:F, 4pv1:F, 1vf5:F, 1vf5:S

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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