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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MSYRVSTGAAHAAKGGGLVSGDSYSMMELGARKYAAAISDGARAHFESNETIKLLEKILESGIDEKIAIKTINSILSLRT
TDEIYSTLDLSIIDLQDASCKFLKVGSTPSFIKRGDQVMKVQASNLPIGIINEFDVEVVSEQLKAGDLLIMMSDGIFEGP
KHVENHDLWMKRKMKGLKTNDPQEIADLLMEEVIRTRSGQIEDDMTVVVVRIDHNTPKWASIPVPAI

The query sequence (length=227) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3t9q:B 227 227 1.0000 1.0000 1.0000 4.64e-169 3t91:A, 3t91:B, 3t9q:A
2 3pu9:A 236 217 0.2203 0.2119 0.2304 4.54e-06 3pu9:B
3 8k7p:A 382 69 0.1101 0.0654 0.3623 0.072 8k7p:B, 8k7q:A, 8k7q:B, 6ksi:A, 6ksi:B, 6ksl:A, 6ksl:B, 6ksm:A, 6ksm:B, 8s9r:A, 8s9r:B, 8yib:A, 8yib:B
4 8elf:B 384 71 0.0837 0.0495 0.2676 0.56 8elf:A
5 7yq8:A 730 90 0.1057 0.0329 0.2667 1.4 7yq8:B, 5zad:A, 5zad:B, 5zen:A, 5zqf:A
6 7qix:R 150 27 0.0617 0.0933 0.5185 1.7 8auv:W, 8b2l:W1, 7qiz:HA
7 3ke6:A 354 77 0.0837 0.0537 0.2468 2.1 3ke6:B
8 3ujk:A 298 51 0.0881 0.0671 0.3922 4.7 3nmv:B, 3ujl:B
9 3in1:A 312 21 0.0529 0.0385 0.5714 6.5 3in1:B
10 7oik:A 4426 66 0.0969 0.0050 0.3333 6.6 7oim:A, 6tax:A, 6tay:A
11 3lxf:A 104 30 0.0441 0.0962 0.3333 7.2 3lxf:B, 3lxf:C, 3lxf:D, 3lxf:E
12 7k1r:A 536 24 0.0485 0.0205 0.4583 7.7 7k1r:B, 7k1r:C, 7k1r:D, 8uws:C, 8uws:D, 8uws:A, 8uws:B
13 7xf0:C 598 33 0.0661 0.0251 0.4545 10.0 7xf0:A, 7xf0:B, 7xf1:A, 7xg3:L, 7xg4:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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