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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MSVVGTPKSAEQIQQEWDTNPRWKDVTRTYSAEDVVALQGSVVEEHTLARRGAEVLWEQLHDLEWVNALGALTGNMAVQQ
VRAGLKAIYLSGWQVAGDANLSGHTYPDQSLYPANSVPQVVRRINNALQRADQIAKIEGDTSVENWLAPIVADGEAGFGG
ALNVYELQKALIAAGVAGSHWEDQLASEKKCGHLGGKVLIPTQQHIRTLTSARLAADVADVPTVVIARTDAEAATLITSD
VDERDQPFITGERTREGFYRTKNGIEPCIARAKAYAPFADLIWMETGTPDLEAARQFSEAVKAEYPDQMLAYNCSPSFNW
KKHLDDATIAKFQKELAAMGFKFQFITLAGFHALNYSMFDLAYGYAQNQMSAYVELQEREFAAEERGYTATKHQREVGAG
YFDRIATTVDPNSSTTALTGSTEEGQFH

The query sequence (length=428) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6c4a:A 428 427 0.9977 0.9977 1.0000 0.0 6c4a:B, 6c4a:C, 6c4a:D, 6c4a:E, 6c4a:F, 6c4a:G, 6c4a:H, 6c4c:A, 6c4c:B, 6c4c:C, 6c4c:D, 6c4c:E, 6c4c:F, 6c4c:G, 6c4c:H, 7cp1:A, 7cp1:B, 5dql:A, 5dql:B, 5dql:C, 5dql:D, 1f61:A, 1f61:B, 1f8i:A, 1f8i:B, 1f8i:C, 1f8i:D, 1f8m:A, 1f8m:B, 1f8m:C, 1f8m:D, 7rb1:A, 7rb1:B, 7rb1:C, 7rb1:D, 6vb9:A, 6vb9:B, 6vb9:C, 6vb9:D, 6wsi:A, 6wsi:B, 6wsi:C, 6wsi:D, 6xpp:A, 6xpp:B, 6xpp:C, 6xpp:D
2 6lrt:A 423 418 0.6636 0.6714 0.6794 0.0 6lrt:D, 6lrt:G, 6lrt:J, 6lrt:M, 6lrt:P, 6lrt:S, 6lrt:V
3 7cmy:C 417 418 0.6379 0.6547 0.6531 0.0
4 7rbx:C 425 410 0.6379 0.6424 0.6659 0.0 7rbx:A, 7rbx:B, 7rbx:D
5 1igw:C 416 408 0.5888 0.6058 0.6176 0.0 1igw:B, 1igw:D
6 1igw:A 396 408 0.5537 0.5985 0.5809 2.92e-161
7 5e9f:D 453 441 0.3692 0.3488 0.3583 3.08e-76
8 5e9g:D 486 466 0.3808 0.3354 0.3498 3.85e-74
9 7ebe:A 544 250 0.2196 0.1728 0.3760 6.75e-44 7ebe:B, 7ebe:C, 7ebe:D
10 7ebe:A 544 177 0.1729 0.1360 0.4181 3.63e-36 7ebe:B, 7ebe:C, 7ebe:D
11 6edw:B 746 250 0.2079 0.1193 0.3560 8.36e-43 6edw:A, 6edw:D, 6edz:A, 6edz:B, 6edz:D, 6ee1:B, 6ee1:D
12 6edw:B 746 128 0.1425 0.0818 0.4766 5.92e-30 6edw:A, 6edw:D, 6edz:A, 6edz:B, 6edz:D, 6ee1:B, 6ee1:D
13 6edw:C 724 257 0.2126 0.1257 0.3541 8.76e-43 6ee1:A, 6ee1:C
14 6edw:C 724 128 0.1425 0.0843 0.4766 6.16e-30 6ee1:A, 6ee1:C
15 8z1r:B 516 249 0.2126 0.1764 0.3655 2.52e-42 8z1r:A
16 8z1r:B 516 158 0.1519 0.1260 0.4114 6.11e-33 8z1r:A
17 5e9g:B 525 249 0.2103 0.1714 0.3614 3.57e-41 5e9f:A, 5e9g:A
18 5e9g:B 525 158 0.1729 0.1410 0.4684 1.44e-35 5e9f:A, 5e9g:A
19 5e9h:A 518 247 0.2056 0.1699 0.3563 9.67e-40
20 5e9h:A 518 158 0.1565 0.1293 0.4241 3.50e-31
21 6edz:C 723 250 0.1963 0.1162 0.3360 5.70e-36
22 6edz:C 723 128 0.1425 0.0844 0.4766 5.70e-30
23 5e9f:B 501 158 0.1729 0.1477 0.4684 1.17e-35 5e9f:C, 5e9g:C
24 5e9f:B 501 249 0.1963 0.1677 0.3373 8.98e-33 5e9f:C, 5e9g:C
25 6g1o:A 486 391 0.2430 0.2140 0.2660 3.94e-25
26 1mum:A 289 254 0.1706 0.2526 0.2874 6.36e-16 1o5q:A, 1o5q:B, 1o5q:C, 1o5q:D, 1xg3:A, 1xg3:B, 1xg3:C, 1xg3:D
27 3fa3:B 302 172 0.1238 0.1755 0.3081 1.03e-11 3fa3:A, 3fa3:C, 3fa3:D, 3fa3:E, 3fa3:F, 3fa3:G, 3fa3:H, 3fa3:I, 3fa3:J, 3fa3:K, 3fa3:L, 3fa3:M, 3fa3:N, 3fa3:O, 3fa3:P, 3fa4:A, 3fa4:B, 3fa4:C, 3fa4:D, 3fa4:E, 3fa4:F, 3fa4:G, 3fa4:H, 3fa4:I, 3fa4:J, 3fa4:K, 3fa4:L
28 3m0j:A 297 186 0.1285 0.1852 0.2957 5.30e-11 3lye:A, 3m0k:A
29 4iqd:A 290 262 0.1612 0.2379 0.2634 6.83e-11 4iqd:B
30 6t4v:C 277 298 0.1893 0.2924 0.2718 1.36e-09 6t4v:A, 6t4v:B, 6t4v:D, 6t5m:C, 6t5m:A, 6t5m:D, 6t5m:B
31 1zlp:B 285 155 0.1168 0.1754 0.3226 1.35e-08 1zlp:A
32 3b8i:A 284 86 0.0724 0.1092 0.3605 0.061 3b8i:B, 3b8i:C, 3b8i:D, 3b8i:E, 3b8i:F
33 2ze3:A 275 88 0.0701 0.1091 0.3409 0.076
34 1m1b:A 291 47 0.0397 0.0584 0.3617 0.44 1m1b:B, 1pym:A, 1pym:B
35 5unc:A 289 103 0.0607 0.0900 0.2524 0.97 5unc:B, 5unc:C, 5unc:D
36 7wlt:A 1353 34 0.0280 0.0089 0.3529 4.4 7wlt:C, 7wlt:E
37 7wlu:A 1498 34 0.0280 0.0080 0.3529 4.5 7wlu:C, 7wlu:E
38 6b3r:A 1502 34 0.0280 0.0080 0.3529 4.5 6b3r:C, 6b3r:E
39 2dua:A 283 103 0.0537 0.0813 0.2233 4.7 2hjp:A
40 7v55:A 781 119 0.0748 0.0410 0.2689 6.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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