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BioLiP
>protein
MSVNVNRSVSDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSH
EANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFILKNP

The query sequence (length=145) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2e9h:A 157 145 1.0000 0.9236 1.0000 1.23e-108 8oz0:H, 8pj2:z, 8pj3:z
2 8cas:m 147 143 0.5793 0.5714 0.5874 7.95e-57 6fyx:m, 6fyy:m, 8s8j:m, 6zu9:m
3 1nee:A 135 117 0.2345 0.2519 0.2906 3.80e-11
4 2d74:B 137 112 0.2276 0.2409 0.2946 1.54e-10 2dcu:B
5 8s8h:l 134 97 0.1931 0.2090 0.2887 3.03e-10 8cas:s, 6fyx:l, 6fyy:l, 6gsm:l, 6gsn:l, 3jap:l, 8s8i:l
6 8pj1:s 159 96 0.1862 0.1698 0.2812 1.85e-09 7a09:4, 8oz0:U, 8ppl:Is, 7qp6:s, 6ybv:s, 6zmw:s, 6zp4:4
7 2qmu:C 132 127 0.2207 0.2424 0.2520 3.31e-05 5jb3:8
8 5jcp:A 361 50 0.1103 0.0443 0.3200 0.26 5jcp:B
9 6joo:A 834 51 0.1379 0.0240 0.3922 0.49
10 7lwb:A 182 95 0.1586 0.1264 0.2421 1.3 7bwt:B, 4lhv:A, 4lhv:B, 4lhv:C, 4lhv:D, 4lhw:A, 4lhw:B, 4lhw:C, 4lhw:D, 4lhw:E, 4lhy:A, 4lhy:B, 4lhz:A, 4lhz:B, 4li0:A, 4li0:B, 3qbt:A, 3qbt:C, 3qbt:E, 3qbt:G, 6rir:A, 6rir:B, 6sq2:A, 6sq2:B, 6stf:A, 6stf:B, 6stf:C, 6stf:D, 6stf:E, 6stg:A, 6stg:B, 5szi:A, 3tnf:A, 6whe:A, 6whe:B, 6yx5:A, 6zsi:A, 6zsi:B, 6zsj:A, 6zsj:B
11 5xip:B 475 32 0.0759 0.0232 0.3438 2.0 5xip:A, 5xip:C, 5xip:D
12 4c2m:I 124 65 0.1241 0.1452 0.2769 4.1 4c2m:X, 4c3h:I, 4c3i:I, 4c3j:I, 6h67:I, 6h68:I, 6hko:I, 6hlr:I, 5lmx:I, 5m3f:I, 5m3m:I, 5m5x:I, 5n61:I, 5oa1:I, 6rqt:I, 6ruo:I, 6rwe:I, 6tps:I, 5w5y:I, 5w64:I, 5w65:I, 5w66:I, 4ym7:AI, 4ym7:BI, 4ym7:CI, 4ym7:DI, 4ym7:EI, 4ym7:FI
13 5n5y:I 99 30 0.0759 0.1111 0.3667 4.5 5n5z:I, 5n60:I
14 6ryr:W 708 44 0.0828 0.0169 0.2727 6.3 2l75:A, 1mm2:A, 6q3m:D, 6ryu:W, 6ryu:V
15 6nes:A 431 53 0.1103 0.0371 0.3019 6.5 6nes:B, 6net:A, 6net:B, 6neu:A, 6neu:B, 6nev:A, 6nev:B
16 3a44:C 122 98 0.1448 0.1721 0.2143 7.6 3a43:B
17 4uvm:A 505 32 0.1034 0.0297 0.4688 7.7
18 1ahi:A 255 92 0.1724 0.0980 0.2717 8.9 1ahh:A, 1ahh:B, 1ahi:B, 1fmc:A, 1fmc:B
19 6jta:A 1298 49 0.0897 0.0100 0.2653 9.9 7dw7:A, 6jt7:A, 6jt8:A, 6jt9:A, 4l78:A, 4lgy:A, 6lyk:A, 6lyl:A, 6lym:A, 6lyo:A, 4mgh:A, 4r7g:A, 1t3t:A, 3ugj:A, 3ujn:A, 3umm:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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