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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MSTPAAEQRKLVEQLMGPKICKSYLVGECPYDLFQGTKQSLGKCPQMHLTKHKIQYEREVKQGKTFPEFEREYLAILSRF
VNECNGQISVALQNLKHTAEERMKIQQVTEELDVLDVRIGLMKLQELISKRKEVAKRVRNITENVGQSAQQKLQVCEVCG
AYLSRLDTDRRLADHFLGKIHLGYVKMREDYDRLMK

The query sequence (length=196) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5zwn:Y 196 196 1.0000 1.0000 1.0000 2.06e-146 6n7p:I, 7oqc:H, 7oqe:H
2 6n7r:I 147 197 0.7245 0.9660 0.7208 5.08e-94
3 6g90:H 158 198 0.5102 0.6329 0.5051 2.44e-64
4 4q86:B 583 34 0.0612 0.0206 0.3529 1.2 4q85:A, 4q85:B, 4q85:C, 4q85:D, 4q85:E, 4q85:G, 4q85:H, 4q86:A, 4q86:C, 4q86:D, 4q86:E, 4q86:G, 4q86:H
5 2q14:C 406 76 0.1122 0.0542 0.2895 1.4 2q14:A, 2q14:B, 2q14:D, 2q14:E, 2q14:F, 2q14:G, 2q14:H
6 4ufc:B 788 31 0.0765 0.0190 0.4839 4.3 4ufc:A
7 4pyg:A 685 67 0.0969 0.0277 0.2836 4.4 6a8p:A, 6a8p:B, 6a8p:C, 9bc3:A, 9bc3:B, 9bc4:A, 1kv3:A, 1kv3:B, 1kv3:C, 1kv3:D, 1kv3:E, 1kv3:F, 6kzb:A, 6kzb:B, 3ly6:A, 3ly6:B, 3ly6:C, 4pyg:B, 4pyg:E, 8tr9:A
8 4fyg:A 743 73 0.1173 0.0310 0.3151 5.2 4fye:A, 4fyf:A
9 8uej:AA 122 53 0.0663 0.1066 0.2453 8.0 8uej:AB, 8uej:AC, 8uej:AG, 8uej:AN, 8uej:AS, 8uej:AT, 8uej:AU, 8uej:AZ, 8uej:BE, 8uej:BG, 8uej:BK, 8uej:BL, 8uej:BM, 8uej:BQ, 8uej:BW, 8uej:BX, 8uej:BY, 8uej:CC, 8uej:CE, 8uej:CI, 8uej:CK, 8uej:CP, 8uej:CU, 8uej:CW, 8uej:DN, 8uej:DS, 8uej:DT, 8uej:DY, 8uej:EA, 8uej:EF, 8uej:EK, 8uej:EL, 8uej:EM, 8uej:EQ, 8uej:ER, 8uej:ES, 8uej:EW, 8uej:EX, 8uej:EY, 8uej:FC, 8uej:FD, 8uej:FJ, 8uej:FK, 8uej:FO, 8uej:FP, 8uej:FQ, 8uej:FU, 8uej:FW, 8uej:GB, 8uej:GG, 8uej:GN, 8uej:GO, 8uej:JS, 8uej:GS, 8uej:GT, 8uej:GU, 8uej:HC, 8uej:HD, 8uej:HE, 8uej:HI, 8uej:HJ, 8uej:HK, 8uej:HO, 8uej:HP, 8uej:HQ, 8uej:HU, 8uej:HW, 8uej:IA, 8uej:IB, 8uej:IC, 8uej:IH, 8uej:II, 8uej:IM, 8uej:IN, 8uej:IT, 8uej:IY, 8uej:IZ, 8uej:JA, 8uej:KE, 8uej:JF, 8uej:JG, 8uej:JK, 8uej:JL, 8uej:JM, 8uej:JQ, 8uej:JR, 8uej:JW, 8uej:KC, 8uej:KD, 8uej:LB, 8uej:KJ, 8uej:KK, 8uej:KO, 8uej:KQ, 8uej:KV, 8uej:LA, 8uej:LG, 8uej:LH, 8uej:LI, 8uej:LM, 8uej:LN, 8uej:LO, 8uej:LS, 8uej:LU, 8uej:LY, 8uej:LZ, 8uej:MA, 8uej:ME, 8uej:MG, 8uej:MK, 8uej:ML, 8uej:MM, 8uej:MR, 8uej:MS, 8uej:NA, 8uej:NN, 2w4y:A, 2w4y:B, 2w4y:C, 2w4z:A, 2w4z:B, 2w4z:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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