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BioLiP
>protein
MSTKLYGDVNDDGKVNSTDAVALKRYVLRSGISINTDNADLNEDGRVNSTDLGILKRYILKEIDTLPYKNG

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1daq:A 71 71 1.0000 1.0000 1.0000 1.60e-45 1dav:A, 2mte:A
2 4fl4:A 68 65 0.5211 0.5441 0.5692 1.06e-18 4fl4:D, 4fl4:G, 4fl4:J
3 2vn6:B 64 63 0.3803 0.4219 0.4286 9.45e-11 2vn5:B, 2vn5:D
4 2ccl:B 62 62 0.4085 0.4677 0.4677 1.84e-10 2ccl:D, 1ohz:B
5 2ccl:B 62 26 0.1549 0.1774 0.4231 0.52 2ccl:D, 1ohz:B
6 3ul4:B 63 60 0.4225 0.4762 0.5000 2.31e-10
7 4dh2:B 72 65 0.3944 0.3889 0.4308 3.10e-09 4dh2:D
8 2y3n:B 60 61 0.3380 0.4000 0.3934 7.02e-06
9 8x3a:A 151 61 0.3239 0.1523 0.3770 1.76e-05 8x39:A, 8x39:B
10 8x3a:A 151 69 0.2676 0.1258 0.2754 1.5 8x39:A, 8x39:B
11 6kg9:A 67 52 0.3099 0.3284 0.4231 2.80e-05 6kgc:B, 6kgd:B, 6kge:D, 6kge:B, 6kgf:D, 6kgf:B
12 6kg9:A 67 29 0.1690 0.1791 0.4138 2.4 6kgc:B, 6kgd:B, 6kge:D, 6kge:B, 6kgf:D, 6kgf:B
13 5lxv:B 65 63 0.3099 0.3385 0.3492 2.35e-04 5lxv:D
14 4uyp:B 73 67 0.2958 0.2877 0.3134 8.63e-04 4uyp:D, 4uyq:B
15 4uyp:B 73 33 0.1549 0.1507 0.3333 0.46 4uyp:D, 4uyq:B
16 5nrk:B 68 61 0.2676 0.2794 0.3115 0.003 5nrk:D, 5nrm:B
17 2y3n:D 49 61 0.2817 0.4082 0.3279 0.027
18 5n5p:B 87 43 0.2254 0.1839 0.3721 0.071 5n5p:D
19 5m2o:B 74 72 0.3239 0.3108 0.3194 0.93
20 6f5k:A 558 38 0.1972 0.0251 0.3684 1.1
21 6z7p:A 1025 38 0.1972 0.0137 0.3684 1.5 8bqe:B, 8bqe:C, 8bqe:E, 8bqe:D, 8bqe:F, 8bqe:A, 5n8p:A, 5n8p:B, 5n8p:C, 5n8p:D, 5n8p:E, 5n8p:F, 5n97:A, 5n97:B, 5n97:C, 5n97:D, 5n97:E, 5n97:F, 7peo:A, 6t72:A
22 5m2s:B 79 75 0.3239 0.2911 0.3067 2.4
23 4lt6:A 467 38 0.1549 0.0236 0.2895 3.8 4lt6:B
24 2ozn:B 131 54 0.2254 0.1221 0.2963 5.1
25 5kcv:A 353 30 0.1268 0.0255 0.3000 5.2
26 4p90:A 272 36 0.1831 0.0478 0.3611 6.1 5kbr:A, 5kbr:B, 4p90:B
27 3qy6:A 247 22 0.1268 0.0364 0.4091 6.8 3qy7:A
28 3fu7:A 559 31 0.1549 0.0197 0.3548 6.9 3dkh:A, 3dkh:B, 3fu7:B, 3fu8:A, 3fu8:B, 3fu9:A, 3fu9:B, 1gw0:A, 1gw0:B, 2ih8:A, 2ih8:B, 2ih9:A, 2ih9:B, 2q9o:A, 2q9o:B, 3qpk:A, 3qpk:B
29 1lm4:A 190 29 0.1549 0.0579 0.3793 7.8 6jfg:A, 6jfo:A, 6jfq:A, 6jfr:A, 6jfs:A, 1lm4:B, 1lmh:A, 1lqw:A, 1lqw:B, 1q1y:A, 3u7k:A, 3u7l:A, 3u7m:A, 3u7n:A
30 5m0y:B 157 49 0.2113 0.0955 0.3061 8.0 5k39:B
31 6cp3:C 508 37 0.1972 0.0276 0.3784 8.1 4b2q:A, 4b2q:B, 4b2q:C, 4b2q:a, 4b2q:b, 4b2q:c, 6b8h:K, 6b8h:B, 6b8h:C, 6b8h:n, 6b8h:W, 6b8h:X, 6cp3:A, 6cp3:B, 6cp6:A, 6cp6:B, 6cp6:C, 8f29:A, 8f29:B, 8f29:C, 8f2k:A, 8f2k:B, 8f2k:C, 8f39:A, 8f39:B, 8f39:C, 8fl8:A, 8fl8:B, 8fl8:C, 2hld:A, 2hld:B, 2hld:C, 2hld:J, 2hld:K, 2hld:L, 2hld:S, 2hld:T, 2hld:U, 7md2:A, 7md2:C, 7md3:A, 7md3:B, 7md3:C, 3oe7:A, 3oe7:B, 3oe7:C, 3oe7:J, 3oe7:K, 3oe7:L, 3oe7:S, 3oe7:T, 3oe7:U, 3oee:A, 3oee:B, 3oee:C, 3oee:J, 3oee:K, 3oee:L, 3oee:S, 3oee:T, 3oee:U, 3oeh:A, 3oeh:B, 3oeh:C, 3oeh:J, 3oeh:K, 3oeh:L, 3oeh:S, 3oeh:T, 3oeh:U, 3ofn:A, 3ofn:B, 3ofn:C, 3ofn:J, 3ofn:K, 3ofn:L, 3ofn:S, 3ofn:T, 3ofn:U, 7tjs:A, 7tjs:B, 7tjs:C, 7tjt:A, 7tjt:B, 7tjt:C, 7tju:A, 7tju:B, 7tju:C, 7tjv:A, 7tjv:B, 7tjv:C, 7tjw:A, 7tjw:B, 7tjw:C, 7tjx:A, 7tjx:B, 7tjx:C, 2wpd:A, 2wpd:B, 2wpd:C, 2xok:A, 2xok:B, 2xok:C, 3zia:A, 3zia:B, 3zia:C, 3zia:K, 3zia:L, 3zia:M, 3zry:A, 3zry:B, 3zry:C
32 5hlo:C 93 31 0.1408 0.1075 0.3226 8.9 6ds2:A, 6ds2:C, 6ds2:E, 6ds2:G, 4ggf:A, 4ggf:K, 4ggf:S, 4ggf:U, 5hlo:A, 5hlo:B, 5hlo:D, 5hlv:A, 5hlv:D, 5hlv:B, 5hlv:H, 5hlv:C, 5hlv:E, 5hlv:F, 5hlv:G, 1mr8:A, 1mr8:B, 7quv:A, 8sjb:A, 8sjb:B, 8sjc:A, 8sjc:B, 5w1f:A, 5w1f:C, 5w1f:G, 5w1f:E, 4xjk:A, 4xjk:C, 4xjk:E, 4xjk:G, 4xjk:I, 1xk4:A, 1xk4:B, 1xk4:E, 1xk4:F, 1xk4:I, 1xk4:J
33 2z2p:A 293 33 0.2113 0.0512 0.4545 9.6 2z2p:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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