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BioLiP
>protein
MSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLKKHLESEEAN
AA

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5fvl:A 83 82 1.0000 0.9880 1.0000 2.77e-55 5fvk:A, 5fvk:B, 5fvl:B, 4niq:A, 4niq:B
2 4u7y:A 83 81 0.4512 0.4458 0.4568 1.83e-14 2jqk:A
3 2k3w:A 73 69 0.4024 0.4521 0.4783 2.70e-13 2jq9:A
4 2ymb:D 231 69 0.2683 0.0952 0.3188 4.64e-09 4a5x:A, 4a5x:B, 2ymb:C
5 1chm:A 401 34 0.1585 0.0324 0.3824 0.55 1chm:B
6 6enz:A 487 43 0.1707 0.0287 0.3256 0.92 6enz:B
7 6gne:B 494 28 0.1585 0.0263 0.4643 3.8 6gne:A
8 4v7e:BY 138 64 0.2317 0.1377 0.2969 4.3 8ip8:ba, 8ip9:ba, 8ipa:ba, 8ipb:ba, 8jiw:BY, 4v3p:SU
9 6dql:A 227 50 0.1829 0.0661 0.3000 5.4
10 6p2l:A 685 59 0.2195 0.0263 0.3051 8.0
11 5mul:A 378 49 0.1951 0.0423 0.3265 8.2
12 4iee:A 452 45 0.1463 0.0265 0.2667 10.0 5c12:A, 5c15:A, 5c2d:A, 5c2f:A, 4iei:A, 4ife:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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