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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MSSQVEHPAGGYKKLFETVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKEGHVTYH
RRFIRTDAYVRAMTEKRIVITEFGTCAFPEVTDNALVNIYPVGEDYYACTETNFITKVNPETLETIKQVDLCNYVSVNGA
TAHPHIENDGTVYNIGNCFIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFGLTPNYIVFVETPVKINLF
KFLSGANYMDCFESNETMGVWLHIADKKRKKYINNKYRTSPFNLFHHINTYEDHEFLIVDLCCWKGFEFVYNYLYLANLR
ENWEEVKKNARKAPQPEVRRYVLPLNIDKADTGKNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQAFEFPQINYQKYG
GKPYTYAYGLGLNHFVPDRLCKLNVKTKETWVWQEPDSYPSEPIFVSHPDALEEDDGVVLSVVVSPGAGQKPAYLLILNA
KDLSEVARAEVEINIPVTFHGLFKKS

The query sequence (length=506) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4f30:A 521 521 0.9960 0.9674 0.9674 0.0 8doc:A, 4f2z:A, 4f2z:E, 4f3a:A, 4f3d:A, 4f3d:B, 3fsn:A, 3fsn:B, 7k88:B, 7k89:A, 7k89:B, 7k8g:B, 7l0e:A, 7l0e:B, 4rsc:A, 4rsc:B, 4rse:A, 4rse:B, 4ryx:A, 4ryy:A, 4ryy:B, 4ryz:A, 4ryz:B, 5ul5:A, 5ul5:B, 5ulg:A, 5ulg:B, 4zhk:A, 4zhk:B
2 7k88:A 501 507 0.9862 0.9960 0.9842 0.0 7k8g:A, 3kvc:A, 3kvc:B
3 7wh1:A 499 508 0.3241 0.3287 0.3228 1.37e-84
4 7wh0:A 529 533 0.3360 0.3214 0.3189 1.19e-82 7wh0:B
5 8fty:A 483 501 0.3379 0.3540 0.3413 3.61e-81 8fty:C
6 8fty:B 506 519 0.3399 0.3399 0.3314 1.25e-79 8fty:D, 8fty:E, 8fty:F, 8fty:G, 8fty:H
7 6vcf:B 455 495 0.3300 0.3670 0.3374 2.25e-77 6vcf:A, 6vcf:C, 6vcf:D, 6vcf:F, 6vcg:A, 6vcg:B, 6vcg:C, 6vcg:D, 6vch:A, 6vch:B, 6vch:C, 6vch:D
8 6vcf:E 432 480 0.3043 0.3565 0.3208 2.20e-63 6vcg:E, 6vcg:F, 6vch:E, 6vch:F
9 5kja:A 482 503 0.2490 0.2614 0.2505 2.20e-30 2biw:A, 2biw:B, 2biw:C, 2biw:D, 2bix:A, 2bix:B, 6big:A, 6big:B, 6big:C, 6big:D, 6c7k:A, 6c7k:B, 6c7k:C, 6c7k:D, 6c7o:A, 6c7o:B, 6c7p:B, 6c7p:A, 5kja:B, 5kja:C, 5kja:D, 5kja:E, 5kjb:A, 5kjb:B, 5kjb:C, 5kjb:D, 5kjb:E, 5kjd:A, 5kjd:B, 5kjd:C, 5kjd:D, 5kjd:E, 5kk0:A, 5kk0:B, 5kk0:C, 5kk0:D, 4ou8:A, 4ou8:B, 4ou8:C, 4ou8:D, 4ou9:A, 4ou9:B, 4ou9:C, 4ou9:D
10 3npe:A 522 511 0.2372 0.2299 0.2348 1.05e-10
11 6ojt:B 481 502 0.2055 0.2162 0.2072 3.22e-10 6ojr:A, 6ojt:A, 6ojw:B, 6ojw:A
12 5v2d:A 488 472 0.1996 0.2070 0.2140 1.70e-09 5v2d:B, 5v2d:C, 5v2d:D
13 6n20:D 501 284 0.1206 0.1218 0.2148 2.37e-08 6b86:A, 6b86:B, 6b86:C, 6b86:D, 8fu2:A, 8fu2:B, 8fu2:C, 8fu2:D, 8fu5:A, 8fu5:B, 8fu5:C, 8fu5:D, 6n1y:A, 6n1y:B, 6n1y:C, 6n1y:D, 6n20:A, 6n20:C, 6n20:B, 6n21:A, 6n21:B, 6n21:C, 6n21:D, 8srl:A, 8srl:B, 8srl:C, 8srl:D, 7t8p:A, 7t8p:B, 7t8p:C, 7t8p:D, 7t8q:A, 7t8q:B, 7t8q:C, 7t8q:D, 5u8x:A, 5u8x:B, 5u8x:C, 5u8x:D, 5u8y:A, 5u8y:B, 5u8y:C, 5u8y:D, 5u8z:A, 5u8z:B, 5u8z:C, 5u8z:D, 5u90:A, 5u90:B, 5u90:C, 5u90:D, 5u97:A, 5u97:B, 5u97:C, 5u97:D
14 5j55:A 480 500 0.2036 0.2146 0.2060 2.88e-08 5j53:A, 5j54:A, 7qr6:A, 7qr6:B, 7qr6:C
15 7vud:A 535 536 0.2194 0.2075 0.2071 5.62e-08
16 6xm7:A 488 504 0.2016 0.2090 0.2024 0.12 6xm6:A, 6xm8:A, 6xm9:A, 6xma:A
17 8cbl:E 692 70 0.0395 0.0289 0.2857 3.1
18 4j6o:A 261 59 0.0356 0.0690 0.3051 3.8 4j6o:B
19 7pin:J 36 22 0.0217 0.3056 0.5000 4.1 7pin:J1, 7piw:J1, 7pnk:J
20 5e1r:C 358 47 0.0316 0.0447 0.3404 6.3 5e1r:A, 5e1r:B, 5e1r:D, 5e1r:E, 5e1r:F
21 8wgh:N 84 32 0.0296 0.1786 0.4688 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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