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BioLiP
>protein
MSSGPRLNTDYTSANQDSRVQFIVLHYTSTDLPHSLGILTHGGVSAHYLIGDDEPATVYRLVDENRRAWHAGVSEWQGRT
WLNATSIGIEIVNQGYRDTPQGRVWYPFSEAQIQALIPLLKDIAKRHGITPDRIIGHSDIAPGRKVDPGPLFPWKRLADA
GLVPWPKPGELARRLAELNGQLPDVRWFQQQLARHGYLVPQTGELEKDTRDVIGAFQMKYRPARFDGEPDLETAALLLAV
PTS

The query sequence (length=243) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4bol:A 243 243 1.0000 1.0000 1.0000 0.0 4bol:B, 4bpa:B
2 3d2y:A 257 245 0.4280 0.4047 0.4245 5.09e-57 2bh7:A, 3d2z:A, 2wkx:A
3 4bxd:A 255 252 0.4321 0.4118 0.4167 8.38e-47 4bxd:B, 4bxe:A, 4bxe:B
4 1j3g:A 187 125 0.2016 0.2620 0.3920 1.58e-18 2y28:A, 2y28:B, 2y28:C, 2y2b:A, 2y2b:B, 2y2b:C, 2y2d:A, 2y2d:B, 2y2d:C, 2y2e:A, 2y2e:B, 2y2e:C
5 5x9u:A 494 104 0.1193 0.0587 0.2788 0.025 5x9u:B, 5x9u:C, 5x9u:D, 5x9v:A, 5x9v:B, 5x9v:C, 5x9v:D
6 3hmb:B 156 94 0.1111 0.1731 0.2872 0.23 3hmb:A, 3hmb:C, 3rdr:A
7 2nom:B 255 114 0.1111 0.1059 0.2368 0.59
8 1lqa:A 346 85 0.0905 0.0636 0.2588 0.61 1lqa:B
9 5o2w:A 248 50 0.0700 0.0685 0.3400 1.7 5o2x:A
10 1wqa:A 455 91 0.0988 0.0527 0.2637 2.3 1wqa:B, 1wqa:C, 1wqa:D
11 6y0r:AAA 468 113 0.1317 0.0684 0.2832 6.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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