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BioLiP
>protein
MSSETVTLYEAIGGDATVRALTRRFYELMDTLPEAARCRAIHPADLSGSEAKFYDYLTGYLGGPPVYVEKHGHPMLRRRH
FVAPIGPAERDEWLLCFRRAMDETIENAKLREIIWAPVERLAFHMQNQEA

The query sequence (length=130) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2xyk:B 130 130 1.0000 1.0000 1.0000 9.42e-96 2xyk:A
2 4uur:A 124 122 0.3846 0.4032 0.4098 1.97e-29 4uur:B
3 2bkm:A 128 121 0.4154 0.4219 0.4463 1.28e-26 2bkm:B
4 1ux8:A 118 119 0.3846 0.4237 0.4202 1.26e-24
5 5v3u:A 131 126 0.3692 0.3664 0.3810 3.35e-24 5v3t:A, 5v3t:B, 5v3u:B, 5v3v:A, 5v3v:B
6 5d1v:A 121 98 0.3308 0.3554 0.4388 2.74e-19 5d1v:B
7 4uzv:A 129 126 0.3615 0.3643 0.3730 4.86e-18 2bmm:A
8 1ngk:B 127 113 0.3231 0.3307 0.3717 7.71e-17 1ngk:A, 1ngk:C, 1ngk:D, 1ngk:E, 1ngk:F, 1ngk:G, 1ngk:H, 1ngk:I, 1ngk:J, 1ngk:K, 1ngk:L, 2qrw:A, 2qrw:B, 2qrw:C, 2qrw:D, 2qrw:E, 2qrw:F, 2qrw:G, 2qrw:H, 2qrw:I, 2qrw:J, 2qrw:K, 2qrw:L
9 4nk2:A 164 74 0.1769 0.1402 0.3108 7.09e-09 4nk1:A, 4nk1:B, 4nk2:B
10 4c0n:A 150 53 0.1308 0.1133 0.3208 1.05e-06 4c44:A
11 1dlw:A 116 85 0.1769 0.1983 0.2706 5.64e-04 1uvy:A
12 3aq5:A 117 84 0.1923 0.2137 0.2976 0.005 3aq5:B, 3aq6:A, 3aq6:B, 3aq7:A, 3aq7:B, 3aq8:A, 3aq8:B, 3aq9:A, 3aq9:B
13 2ig3:A 127 124 0.2308 0.2362 0.2419 0.13 2ig3:B
14 7ak6:P 288 42 0.1154 0.0521 0.3571 0.48
15 5ymr:B 798 36 0.1000 0.0163 0.3611 0.93 5ymr:D, 5ymr:C, 5ymr:A
16 3c25:A 354 36 0.1077 0.0395 0.3889 1.2 3bvq:A, 3bvq:B, 3c25:B
17 1s56:B 135 72 0.1385 0.1333 0.2500 3.1 5ab8:A, 2gkm:A, 2gkm:B, 2gkn:A, 2gkn:B, 2gl3:A, 2gl3:B, 2gln:A, 2gln:B, 1idr:A, 1idr:B, 1rte:A, 1rte:B, 1s56:A, 1s61:A, 1s61:B
18 4xz5:A 230 45 0.1231 0.0696 0.3556 3.8 4xz5:B, 4xz5:C, 4xz5:D
19 1lqy:A 184 28 0.0846 0.0598 0.3929 4.7
20 2hz1:A 123 89 0.2000 0.2114 0.2921 6.3 2hz2:A, 2hz3:A, 1mwb:A, 1rtx:A, 1s69:A, 1s6a:A
21 1uwc:A 261 38 0.0846 0.0421 0.2895 8.1 2bjh:A, 2bjh:B, 2bjh:C, 1uwc:B
22 4xdi:A 127 61 0.1385 0.1417 0.2951 8.8 6cii:A, 4xdi:B
23 8v3o:A 471 38 0.0923 0.0255 0.3158 9.1 8v3p:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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