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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MSRLKTAVYDYLNDVDITECTEMDLLCQLSNCCDFINETYAKNYDTLYDIMERDILSYNIVNIKNTLTFALRDASPSVKL
ATLTLLASVIKKLNKIQHTDAAMFSEVIDGIVAEEQQVIGFIQKKCK

The query sequence (length=127) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2jby:A 127 127 1.0000 1.0000 1.0000 7.14e-91
2 6xy6:C 138 126 0.2835 0.2609 0.2857 4.10e-07 6xy4:A, 6xy6:A, 6xy6:E, 6xy6:G, 6xy6:I, 6xy6:K, 6xy6:M, 6xy6:O
3 4uf2:A 136 127 0.2441 0.2279 0.2441 0.002 4uf1:A, 4uf3:A
4 6tqp:A 142 137 0.2913 0.2606 0.2701 0.36 6tqq:A, 6trr:A
5 8ci5:A 1258 59 0.1575 0.0159 0.3390 1.2
6 4r4n:B 342 55 0.1024 0.0380 0.2364 2.1 4r4n:A, 4r4n:E, 4r4n:I, 4r4n:M, 4r4n:P, 4r4n:S, 4r4n:V
7 5ajk:A 148 67 0.1339 0.1149 0.2537 2.2 5ajj:A, 5ajk:C, 5ajk:E, 5ajk:G, 5ajk:I, 5ajk:K, 4d2l:A, 4d2m:A, 4d2m:C
8 5csl:B 2072 72 0.1496 0.0092 0.2639 2.9 5ctb:A, 5ctb:C, 5ctc:A, 5ctc:B, 5ctc:C, 5cte:B, 5cte:C, 3h0s:A, 3k8x:A, 3k8x:B, 3k8x:C, 1od2:A, 1od2:B, 3pgq:A, 3pgq:C, 3tv5:A, 3tv5:B, 3tv5:C, 3tvu:A, 3tvu:B, 3tvu:C, 3tvw:A, 3tvw:B, 3tvw:C, 3tz3:A, 3tz3:B, 3tz3:C, 1w96:A, 1w96:B, 1w96:C, 4wyo:B, 4wyo:C, 4wz8:B, 4wz8:C
9 8axf:D 263 69 0.1102 0.0532 0.2029 3.2 8axf:A, 8axf:C, 8axf:B
10 4j6r:G 343 41 0.0866 0.0321 0.2683 3.2
11 4yfi:C 269 28 0.0945 0.0446 0.4286 3.4 6b5j:A, 6b5j:B, 6b5j:C, 6b5j:D, 7mgj:A, 7mgj:B, 7mgj:C, 7mgj:D, 7mgk:A, 7mgk:B, 7mgk:C, 7mgk:D, 4yff:A, 4yff:B, 4yff:C, 4yff:D, 4yfi:A, 4yfi:B, 4yfi:D
12 5hjh:D 178 102 0.1732 0.1236 0.2157 4.7 5hjh:A, 5hjh:B, 5hjh:C, 5i4j:A, 5i4j:B, 5i4j:C, 5i4j:D
13 6jbx:A 146 38 0.1181 0.1027 0.3947 7.0 6jbx:B
14 9eq5:A 511 46 0.1181 0.0294 0.3261 7.6 9eq5:D, 9eq5:B, 9eq5:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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