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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MSRIIMLIPTGTSVGLTSVSLGVIRAMERKGVRLSVFKPIAQPAAEPLKMSYVEGLLSSNQKDVLMEEIVANYHANTKDA
EVVLVEGLVPTRKHQFAQSLNYEIAKTLNAEIVFVMSQGTDTPEQLKERIELTRNSFGGAKNTNITGVIVNRPDLSEIFD
DSLQESSPLPVLG

The query sequence (length=173) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7t85:A 173 173 1.0000 1.0000 1.0000 4.42e-126
2 7p09:F 520 125 0.1850 0.0615 0.2560 3.0 7ksl:C, 7ksl:E, 7p0m:F
3 7kyc:A 1178 72 0.0867 0.0127 0.2083 3.4 7drx:A, 7dsh:A, 7dsi:A, 7f7f:A, 7ky6:A, 7kyb:A, 7whv:A, 7whw:A
4 8wiv:D 602 94 0.1329 0.0382 0.2447 3.5 8wk0:D
5 4j75:A 374 43 0.0867 0.0401 0.3488 3.5 4j75:B, 4jfa:A, 4jfa:B, 4jfa:D
6 8iug:C 316 76 0.1329 0.0728 0.3026 3.6 8hju:C, 8hjv:C, 8iun:C, 8j5o:C, 8j5p:C, 5yq7:C
7 7kdx:B 664 47 0.0751 0.0196 0.2766 4.7 7kdx:A, 7kdy:A, 7kdy:B
8 4xr9:A 456 23 0.0578 0.0219 0.4348 4.7
9 4cuk:A 330 45 0.0751 0.0394 0.2889 5.6 4cuk:D
10 8qdx:C 837 37 0.0694 0.0143 0.3243 5.9 9gbv:A, 9gbv:C, 9ggq:C, 9ggq:A, 8qdx:A, 8qqi:A, 8qqi:C, 8qqs:A, 8qqs:C, 8qqu:C, 6rks:C, 6rks:A, 6rku:C, 6rku:A, 6rkv:C, 6rkv:A, 6rkw:C, 6rkw:A, 4tma:E, 2y3p:A, 2y3p:B, 7z9c:A, 7z9c:C, 7z9g:A, 7z9g:C, 7z9k:A, 7z9k:C, 7z9m:A, 7z9m:C
11 4jfa:C 348 39 0.0809 0.0402 0.3590 7.8
12 3ai2:A 263 63 0.1329 0.0875 0.3651 8.6 3ai2:B, 3ai2:H, 3ai2:D, 3ai2:E, 3ai2:C, 3ai2:F, 3ai2:G, 3ai3:A, 3ai3:C, 3ai3:E, 3ai3:G
13 8wk0:N 542 107 0.1503 0.0480 0.2430 8.7
14 8wiv:O 657 107 0.1503 0.0396 0.2430 9.4 8wiv:M, 8wiv:L, 8wj3:M, 8wj3:O, 8wj3:L, 8wk0:M, 8wk0:O, 8wk0:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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