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BioLiP
>protein
MSRIDSDLQKALKKACSVEETAPKRKHVRACIVYTWDHQSSKAVFTTLKTLPLANDEVQLFKMLIVLHKIIQEGHPSALA
EAIRDRDWIRSLGRVHSGGSSYSKLIREYVRYLVLKLDFHAHHRGFNNGTFEYEEYVSLVSVSDPDEGYETILDLMSLQD
SLDEFSQIIFASIQSERRNTECKISALIPLIAESYGIYKFITSMLRAMHRQLQPLKERYELQHARLFEFYADCSSVKYLT
TLVTIPK

The query sequence (length=247) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7b2l:B 247 247 1.0000 1.0000 1.0000 0.0 7b2l:G, 7b2l:L, 7b2l:Q
2 6t5z:A 174 76 0.0729 0.1034 0.2368 0.75 6t5z:B, 6t5z:C
3 3n9s:A 307 48 0.0607 0.0489 0.3125 1.5 3c4u:A, 3c4u:B, 3c52:A, 3c52:B, 3c56:A, 3c56:B, 3n9r:A, 3n9r:B, 3n9r:K, 3n9r:P, 3n9r:U, 3n9r:Z, 3n9r:e, 3n9r:j, 3n9s:B, 5uck:A, 5uck:B, 5ucn:A, 5ucn:B, 5ucp:A, 5ucp:B, 5ucs:A, 5ucs:B, 5ucz:A, 5ucz:B, 5ud0:B, 5ud2:A, 5ud2:B, 5ud3:A, 5ud3:B, 5ud4:A, 5ud4:B, 5vjf:A, 5vjf:B
4 7q3a:B 340 61 0.0769 0.0559 0.3115 4.2 7q3a:A
5 3ocu:A 247 32 0.0405 0.0405 0.3125 5.4 3et4:A, 3et5:A, 3ocv:A, 3ocw:A, 3ocx:A, 3ocy:A, 3ocz:A, 3sf0:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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