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BioLiP
>protein
MSQDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF
EIPTEMSLELLLAADYLSI

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1hv2:A 99 99 1.0000 1.0000 1.0000 3.14e-68
2 2jz3:C 96 96 0.3838 0.3958 0.3958 4.10e-18 9bju:K, 6gmn:B, 6gmx:B
3 6gmn:K 87 93 0.3434 0.3908 0.3656 2.67e-15 3dcg:D, 3dcg:B, 6gmx:K
4 8zuh:B 137 99 0.2727 0.1971 0.2727 0.004
5 3c4w:B 519 62 0.2222 0.0424 0.3548 0.006 3c4w:A, 3c4x:A, 3c4x:B, 3c4z:A, 3c50:A, 3c50:B, 3c51:A, 4l9i:A, 4l9i:B, 7mt8:G, 7mt9:G, 7mta:G, 7mtb:G, 4pni:A, 3qc9:A, 3qc9:B, 3qc9:C, 3qc9:D, 3t8o:A, 4wbo:A, 4wbo:B, 4wbo:C, 4wbo:D
6 6u5w:A 1435 103 0.3131 0.0216 0.3010 0.25
7 7udj:H 192 50 0.1212 0.0625 0.2400 1.9
8 5xy3:E 135 55 0.1616 0.1185 0.2909 6.4
9 3avt:A 1203 27 0.1111 0.0091 0.4074 7.1 7abz:6, 5afi:z, 3agp:A, 3agq:A, 3avu:A, 3avv:A, 3avw:A, 3avx:A, 3avy:A, 7bbn:A, 7bbn:B, 2bvn:A, 2bvn:B, 1efm:A, 1etu:A, 4fwt:A, 2hcj:A, 2hcj:B, 2hdn:A, 2hdn:B, 2hdn:C, 2hdn:D, 2hdn:E, 2hdn:F, 2hdn:G, 2hdn:H, 2hdn:I, 2hdn:J, 2hdn:K, 2hdn:L, 5i4r:C, 5i4r:D, 5i4r:G, 5i4r:H, 3mmp:G, 5opd:A, 5opd:B, 4pc2:A, 4pc2:B, 4pc3:A, 4pc3:B, 4pc6:A, 4pc6:B, 4pc7:A, 3u6b:B, 3u6b:A, 3vnu:A, 3vnv:A, 6wd4:8, 6wd7:8, 6wd9:8, 6wda:8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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