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BioLiP
>protein
MSNLEKQIEQAREEAHKICDTEGATSGQCAAAWDALEELQAEAAHQRAEQQDHKTSFQQYCDDNPDAAECRIYDD

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6gfo:E 75 75 1.0000 1.0000 1.0000 1.65e-50 6gfo:F, 6ghl:F, 6ghr:F, 6gve:P, 6gve:C, 6gve:H, 6gve:M
2 6kez:N 73 69 0.3867 0.3973 0.4203 1.15e-13 6kez:P, 6kez:M
3 5npl:A 181 45 0.3867 0.1602 0.6444 6.26e-13
4 6enz:A 487 40 0.2267 0.0349 0.4250 1.2 6enz:B
5 6lp5:A 170 21 0.1333 0.0588 0.4762 1.3 6lp5:B, 6lp5:C, 6lp5:D, 6lp5:E, 6lp5:F
6 7q54:C 368 18 0.0933 0.0190 0.3889 1.4 2pkq:O, 2pkq:Q, 2pkq:T, 7q53:O, 7q53:Q, 7q54:Q, 7q54:O, 7q54:A, 7q55:O, 7q55:Q, 7q55:A, 7q55:C, 7q55:E, 7q55:G, 7q55:I, 7q55:K, 7q56:K, 7q56:E, 7q56:I, 7q56:A, 7q56:G, 7q56:C, 7q56:Q, 7q56:O, 7q57:O, 7q57:Q, 7q57:A, 7q57:C, 7q57:G, 7q57:E, 7q57:I, 7q57:K, 7q57:M, 7q57:S
7 3zwm:H 253 12 0.1067 0.0316 0.6667 3.5 3i9j:A, 3i9j:B, 3i9k:B, 3i9l:A, 3i9o:A, 3i9o:B, 1r15:A, 1r15:B, 1r15:C, 1r15:D, 1r15:E, 1r15:F, 1r15:G, 1r15:H, 1r16:A, 1r16:B, 3zwm:A, 3zwm:B, 3zwm:C, 3zwm:D, 3zwm:E, 3zwm:F, 3zwm:G, 3zwn:A, 3zwn:B, 3zwo:A, 3zwo:B, 3zwo:C, 3zwo:E, 3zwo:F, 3zwo:G, 3zwo:H, 3zwp:A, 3zwp:B, 3zwp:C, 3zwp:D, 3zwp:E, 3zwp:F, 3zwp:G, 3zwp:H, 3zwv:A, 3zwv:H, 3zwv:B, 3zwv:C, 3zwv:D, 3zwv:E, 3zwv:F, 3zwv:G, 3zww:A, 3zww:B, 3zww:C, 3zww:D, 3zww:E, 3zww:F, 3zww:G, 3zww:H, 3zwx:A, 3zwx:B, 3zwx:C, 3zwx:D, 3zwx:E, 3zwx:F, 3zwx:G, 3zwx:H, 3zwy:A, 3zwy:B, 3zwy:C, 3zwy:D, 3zwy:E, 3zwy:F, 3zwy:G, 3zwy:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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