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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MSMLVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSAKIREMIWEQIAGLAEEGNVVMAWATNTETGFEFQTFGLNRRTP
VDLDGLRLVSFLPV

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5vvj:F 95 94 1.0000 0.9895 1.0000 5.68e-64 5dlj:F, 5dlj:E, 5dqt:F, 5dqt:E, 5dqt:N, 5dqt:M, 5dqu:F, 5dqu:E, 5dqz:F, 5dqz:E, 5ds4:F, 5ds4:E, 5ds5:E, 5ds5:F, 5ds6:E, 5ds6:F, 5vvj:E, 5vvk:E, 5vvk:F, 5vvl:E, 5vvl:F, 5wfe:E, 5wfe:F
2 8fy9:D 93 93 0.3830 0.3871 0.3871 1.47e-17 8fy9:A, 8fya:D, 8fya:A, 8fyb:D, 8fyb:A, 8fyc:D, 8fyc:A, 8fyd:A
3 5i2d:G 195 62 0.2128 0.1026 0.3226 0.62 5i2d:H, 5i2d:R, 5i2d:S
4 2vk1:A 562 40 0.1596 0.0267 0.3750 0.82 1pvd:A, 1pvd:B, 1pyd:A, 1pyd:B, 1qpb:A, 1qpb:B, 2vk1:B, 2vk1:C, 2vk1:D, 2vk8:A, 2vk8:B, 2vk8:C, 2vk8:D, 2w93:A, 2w93:B, 2w93:C, 2w93:D
5 2vjy:A 562 46 0.1702 0.0285 0.3478 1.4 6efg:E, 6efh:A, 6efh:B, 2vjy:B, 2vjy:C, 2vjy:D, 2vk4:A, 2vk4:B, 2vk4:C, 2vk4:D
6 2mna:A 117 65 0.1809 0.1453 0.2615 2.5
7 4w8x:A 329 55 0.1915 0.0547 0.3273 2.5
8 6efg:D 537 46 0.1702 0.0298 0.3478 6.0 6efg:A, 6efg:B
9 7toc:A 359 45 0.1702 0.0446 0.3556 8.3 7toc:B
10 2ohv:A 258 42 0.1383 0.0504 0.3095 8.4
11 8b0i:C 242 24 0.1064 0.0413 0.4167 9.0
12 6exn:H 411 54 0.1596 0.0365 0.2778 9.8 5lj3:H, 5lj5:H, 5mps:H, 5mq0:H
13 7b9v:H 453 54 0.1596 0.0331 0.2778 9.9 7dco:V, 5gm6:Z, 5gmk:Z, 6j6g:Z, 6j6h:Z, 6j6n:Z, 6j6q:Z, 5wsg:Z, 5ylz:S

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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