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BioLiP
>protein
MSLYRLIYSSQGIPNLQPQDLKDILESSQRNNPANGITGLLCYSKPAFLQVLEGECEQVNETYHRIVQDERHHSPQIIEC
MPIRRRNFEVWSMQAISTEQVKTLVLKYSGFTTLRPSAMDPEQCLNFLLDIAKIYE

The query sequence (length=136) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2hfo:A 150 141 1.0000 0.9067 0.9645 1.13e-98 2hfn:A, 2hfn:B, 2hfn:C, 2hfn:D, 2hfn:E, 2hfn:F, 2hfn:G, 2hfn:H, 2hfn:I, 2hfn:J, 2hfo:B, 2hfo:C, 2hfo:D, 2hfo:E, 2hfo:F, 2hfo:G, 2hfo:H, 2hfo:I, 2hfo:J, 3mzi:A, 3mzi:B, 3mzi:C, 3mzi:D, 3mzi:E, 3mzi:F
2 8i98:F 143 136 0.4338 0.4126 0.4338 2.08e-35 8i98:A, 8i98:B, 8i98:C, 8i98:D, 8i98:E, 8i98:G, 8i98:H, 8i98:I, 8i98:J, 8i98:K, 8i98:L, 8i98:M, 8i98:N, 8i98:O, 8i98:P, 8i98:Q, 8i98:R, 8i98:S, 8i98:T, 1x0p:A, 1x0p:B, 1x0p:C, 1x0p:D, 1x0p:E, 1x0p:F, 1x0p:G, 1x0p:H, 1x0p:I, 1x0p:J
3 6w6z:A 151 129 0.3309 0.2980 0.3488 3.75e-16 6w72:A, 6w72:B
4 4hh0:A 383 121 0.3162 0.1123 0.3554 4.14e-15 4hh0:B, 4hh1:A, 4hh1:B, 2iyg:A, 2iyg:B, 2iyi:A, 2iyi:B, 1yrx:A, 1yrx:B, 1yrx:C
5 2bun:A 121 103 0.2868 0.3223 0.3786 5.91e-15
6 5m2a:A 346 107 0.2647 0.1040 0.3364 1.68e-12 5m27:A, 5m27:B, 5m2a:B, 5mbb:A, 5mbb:B, 5mbc:A, 5mbc:B, 5mbd:A, 5mbd:B, 5mbe:A, 5mbe:B, 5mbh:A, 5mbj:A, 5mbk:A, 5nby:A
7 4yut:A 351 107 0.2647 0.1026 0.3364 5.29e-11 8qfe:A, 8qff:A, 8qfg:A, 8qfh:A, 8qfi:A, 8qfj:A, 5x4t:A, 5x4u:A, 5x4v:A, 4yus:A, 4yut:B
8 2byc:A 137 86 0.2059 0.2044 0.3256 9.87e-11 2byc:B
9 3gfx:B 394 121 0.2647 0.0914 0.2975 1.39e-08 3gfx:A, 3gfz:A, 3gfz:B, 3gg0:A, 3gg0:B, 3gg1:A, 3gg1:B, 2kb2:A
10 3gfy:B 374 121 0.2647 0.0963 0.2975 1.49e-08 3gfy:A
11 8ouw:3 619 64 0.1544 0.0339 0.3281 0.044
12 6yw5:II 247 18 0.0735 0.0405 0.5556 0.50 6ywe:II, 6ywx:II, 6ywy:II
13 7o5l:A 417 19 0.0882 0.0288 0.6316 2.3 7o5l:C, 7o5m:A, 7o5m:C, 7zd7:A, 7zd7:C, 7zd8:A, 7zd8:C, 7zd9:A, 7zd9:C
14 6z7n:A 788 125 0.1765 0.0305 0.1920 6.9
15 7kzp:L 370 19 0.0735 0.0270 0.5263 8.1 4ccg:X, 4ccg:Y, 7kzq:L, 7kzq:M, 7kzr:L, 7kzr:M, 7kzs:L, 7kzs:M, 7kzt:L, 7kzt:M, 7kzv:L, 7kzv:M, 3zqs:A
16 3l22:A 429 24 0.0882 0.0280 0.5000 8.5
17 7tei:B 1042 42 0.1250 0.0163 0.4048 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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