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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MSLQMVTVGHNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHFDIKQNHLKLKPAIFSKDSCYLPPLRYPATCSY
KKHQYIIHGGKTPNNELSDKIYIMSVACKNNKKVTFRCTEKDLVGDVPEPRYGHSIDVVYSRGKSMGVLFGGRSYMPSTQ
RTTEKWNSVADCLPHVFLIDFEFGCATSYILPELQDGLSFHVSIARNDTVYILGGHSLASNIRPANLYRIRVDLPLGTPA
VNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLENQKRMVCSLVSLGDNTIEISEMETPDWTSDIKHSKIWFGSNMGNGT
IFLGIPGDNEAFYFYTLRCS

The query sequence (length=340) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6oeo:B 346 346 1.0000 0.9827 0.9827 0.0 6cg0:B, 6cg0:D, 6cij:B, 6cij:D, 6cik:B, 6cil:B, 6oeo:D, 6oeq:D, 6oer:D, 6oes:B, 6oes:D, 6oet:D, 6oet:B, 6xnx:B, 6xnx:D, 6xny:B, 6xny:D, 6xnz:B, 6xnz:D, 5zdz:B, 5zdz:D, 5ze0:B, 5ze0:D, 5ze1:B, 5ze1:D, 5ze2:B, 5ze2:D
2 6dbj:D 352 348 0.5471 0.5284 0.5345 1.28e-137 6dbi:B, 6dbi:D, 6dbj:B, 6dbl:B, 6dbl:D, 6dbo:B, 6dbo:D, 6dbq:D, 6dbr:D, 6dbv:B, 6dbw:B, 3jbw:D, 3jbw:B, 3jbx:B, 3jbx:D, 3jby:D, 3jby:B
3 8bx8:C 3947 143 0.0971 0.0084 0.2308 0.53 7k58:C, 7k5b:C, 7kek:C
4 4gfh:A 1102 30 0.0382 0.0118 0.4333 0.88 4gfh:F, 3l4j:A, 3l4k:A, 1pvg:A, 1pvg:B, 1qzr:A, 1qzr:B, 2rgr:A
5 3oti:A 379 31 0.0324 0.0290 0.3548 0.96 3oti:B
6 7pkt:a 263 62 0.0529 0.0684 0.2903 3.0
7 6nff:A 794 104 0.0824 0.0353 0.2692 5.5
8 2ggq:A 401 38 0.0353 0.0299 0.3158 7.2 5z09:A, 5z09:B, 5z09:C, 5z09:D
9 8dht:A 440 55 0.0471 0.0364 0.2909 8.7 8dht:B, 8dht:C, 8dht:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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