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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MSKQFVRSAKNLVKGYSSTQVLVRNATSNDNHQVSKDSLIELAEKSYDSADFFEIMDMLDKRLNDKGKYWRHIAKALTVI
DYLIRFGSENCVLWCRENLYIIKTLKEFRHEDDEGIDQGQIVRVKAKELTALLSDDERLNEERNMNI

The query sequence (length=147) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7b2l:A 147 147 1.0000 1.0000 1.0000 2.82e-107 7b2l:C, 7b2l:F, 7b2l:H, 7b2l:K, 7b2l:M, 7b2l:P, 7b2l:R
2 5on7:A 147 146 0.7619 0.7619 0.7671 1.05e-85
3 1h0a:A 158 137 0.4694 0.4367 0.5036 1.23e-42
4 2k4i:A 134 29 0.0884 0.0970 0.4483 0.23
5 6c6q:F 113 70 0.1429 0.1858 0.3000 0.37 6c6q:D, 6c74:A, 6e47:F, 6e47:G, 6e48:G, 6e48:F
6 6v2d:G 64 38 0.0952 0.2188 0.3684 1.5 5jjz:A, 7slw:A, 7slw:B, 7slw:C, 7slw:D, 7slw:E, 7slw:F, 8sp6:A, 8sp6:B, 8sp6:C, 8sp6:D, 8sp6:E, 8sp6:F, 6v2d:I, 6v2d:K, 6v2d:A, 6v2d:C, 6v2d:E, 6v2h:A, 6v2h:C, 6v2h:E, 6v2h:G, 6v2h:I, 6v2h:K, 6v3n:A, 6v3n:B, 6v8w:A, 6v8w:B, 6v8w:C, 6v8w:D, 6v8w:E, 6v8w:F, 6v8w:G, 6v8w:H, 6v8w:I, 6v8w:J, 6v8w:K, 6v8w:L, 6v8w:M, 6v8w:N, 6v8w:O, 6v8w:P, 6v8w:Q, 6v8w:R, 6v8w:S, 6v8w:T, 6v8w:U, 6v8w:V, 6v8w:W, 6v8w:X, 6v8w:Y, 6v8w:Z
7 7dsn:A 471 107 0.1837 0.0573 0.2523 2.0 2dh3:A, 6jmq:B
8 5hnv:A 283 51 0.0952 0.0495 0.2745 3.6 5x1q:A, 5x1s:A, 5x1t:A
9 7wdo:A 445 19 0.0612 0.0202 0.4737 5.1 7wdn:A, 7wdp:A, 7wdr:A, 7wds:A, 7wdv:A
10 6z1f:A 466 66 0.1156 0.0365 0.2576 5.9 6z1f:B, 6z1f:C, 6z1f:D, 6z1f:E, 6z1f:F, 6z1f:G, 6z1f:H
11 6a8l:A 183 23 0.0816 0.0656 0.5217 7.4 6a8l:B, 5zn8:A, 5zn8:B
12 8u5a:A 149 94 0.1701 0.1678 0.2660 7.7 8u5a:B
13 4yzo:C 347 88 0.1565 0.0663 0.2614 8.9 4yzo:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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