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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MSKLDSLLKELPTRTAHLYRSIWHKYTEWLKTMPDDLKLFLSQKYIVKYIASHDDIAKDPLPTCDAMIWFSRALDIENND
VLVLQQRLYGLVKLLEFDYSNVIAILQKISINLWNPSTDSLQSKHFKTCQDKLKLLLDFQWKFNTNVSFEDRTTVSLKDL
QCILDDENGKCGLAHSSKPNFVLVPNFQSPFTCPIFTMAVYYYLRFHGVKKYYKGDGYQILSQLEHIPIIRGKSLDQYPR
ELTLGNWYPTIFKYCQLPYTKKHWFQVNQEWPQFPDFSESDSENTIGIPDFYIEKMNRTKLQPCPQVHVHLFPTDLPPDI
QAVFDLLNSVLVTSLPLLYRVFPTHDIFLDPSLKTPQNIAFLTGTLPLDIESQEHLLAQLIDKTGTVS

The query sequence (length=388) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3sqi:A 388 388 1.0000 1.0000 1.0000 0.0 3t79:A, 3t79:D
2 6gys:E 506 305 0.2603 0.1996 0.3311 1.87e-40 6gys:L
3 3ov0:A 318 85 0.0619 0.0755 0.2824 0.34 3oue:A, 3ouq:A, 1rwj:A
4 8gwh:A 295 43 0.0412 0.0542 0.3721 0.43
5 4hln:A 504 71 0.0515 0.0397 0.2817 1.4
6 6ghs:A 285 62 0.0490 0.0667 0.3065 3.8
7 1rmd:A 116 29 0.0284 0.0948 0.3793 4.4
8 6gne:B 494 39 0.0361 0.0283 0.3590 4.8 6gne:A
9 8gvg:A 203 86 0.0619 0.1182 0.2791 8.0 8gvb:A, 4h1l:I, 4h1l:G, 3vxm:D
10 3mbe:C 192 90 0.0644 0.1302 0.2778 9.3 3mbe:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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