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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MSKEQVLKIIKKYTREIAPELEDSPLEPTDSLKKLGIDSVNRAEIIMMVMEDLSLNIPRIELAGAKNIGELADLFAAK

The query sequence (length=78) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5kp8:B 78 78 1.0000 1.0000 1.0000 7.34e-51
2 7ak6:U 88 76 0.3077 0.2727 0.3158 0.005 7a5h:w, 7ak6:T, 8c2s:T, 8c2s:U, 8ca3:T, 8ca5:T, 8ca5:U, 6g2j:U, 6g72:U, 5gup:O, 5gup:X, 5lnk:j, 5lnk:X, 6odd:A, 7oi6:w, 7oi8:w, 7oie:w, 8olt:T, 8om1:U, 5ool:w, 5oom:w, 8pw7:T1, 8q0a:T, 8q0a:U, 8q0f:U, 8q0o:U, 8q1p:T, 8q1u:T, 8q1y:U, 8q25:T, 8q45:T, 8q46:T, 8q46:U, 8q47:T, 8q47:U, 8q49:U, 6q9b:AB, 6q9d:AA, 6qa9:AA, 6qa9:AB, 6qbx:AA, 6qbx:AB, 6qc5:AA, 6qc6:AA, 6qc7:AA, 6qc8:AB, 7qsd:T, 7qsl:T, 7qsn:T, 8qu5:w, 7r41:T, 7r43:T, 7r44:T, 7r45:T, 7r46:T, 7r47:T, 7r47:U, 7r48:T, 7r4c:T, 7r4d:T, 7r4f:U, 7r4g:T, 8rgt:T, 8ud1:1U, 8ueo:1T, 8ueo:1U, 8uep:1U, 8ueq:1T, 8ueq:1U, 8uer:1T, 8uer:1U, 8ues:1T, 8ues:1U, 8uet:1T, 8ueu:1T, 8ueu:1U, 8uev:1T, 8uew:1T, 8uew:1U, 8uex:1T, 8uex:1U, 8uey:1T, 8uey:1U, 8uez:1T, 8uez:1U, 8ugh:1U, 8ugi:1U, 8ugj:1U, 8ugn:1T, 8ugn:1U, 8ugn:5U, 8ugr:1U, 8ugr:5T, 8ugr:5U, 7v2d:X, 7v2f:X, 7v2k:X, 7v30:X, 7v32:X, 7v33:G, 7v3m:X, 7vbl:X, 7vbp:X, 7vwj:G, 7vwl:X, 7vy1:X, 7vye:X, 7vyi:X, 7vzv:X, 7w00:X, 7w0h:X, 7w1o:X, 7w1p:X, 7w20:X, 7w2k:X, 7w2l:X, 7w31:G, 7w32:X, 7w35:X, 7w4c:X, 7w4g:X, 7w4j:X, 7w4k:X, 7w4l:X, 7w4n:X, 7zdh:X, 7zdm:j, 7zdm:X, 7zdp:X, 7zdp:j, 6zka:X, 6zkb:X, 6zkc:X, 6zkd:j, 6zke:X, 6zkf:X, 6zkg:X, 6zkh:X, 6zkh:j, 6zki:X, 6zkj:X, 6zkk:X, 6zkl:X, 6zkm:X, 6zkm:j, 6zkn:X, 6zkn:j, 6zko:X, 6zkp:X, 6zkp:j, 6zkr:X, 6zks:X, 6zkt:X, 6zku:X, 6zr2:T, 6zr2:U, 6ztq:U
3 3dnt:A 415 47 0.2051 0.0386 0.3404 0.022 3tpt:A, 4yg7:K
4 7ar7:T 84 56 0.2179 0.2024 0.3036 0.031 7ar8:T, 8bq6:T
5 8bee:U 87 76 0.2308 0.2069 0.2368 0.047 7aqr:U, 7arb:U, 8bpx:U, 8bq5:U, 8bq6:U
6 7arc:U 84 43 0.1410 0.1310 0.2558 0.10 7ard:U
7 8e73:AB 85 76 0.2179 0.2000 0.2237 0.17
8 7b0n:U 88 44 0.1667 0.1477 0.2955 0.24 6rfq:Q, 6rfr:Q, 6y79:Q
9 7zmb:Q 85 24 0.1282 0.1176 0.4167 0.27 7zm7:O, 7zmb:O, 7zme:Q, 7zmg:O, 7zmg:Q
10 2n5h:A 90 67 0.2179 0.1889 0.2537 0.67 2n5i:A, 6o6e:E
11 2fva:A 82 43 0.1667 0.1585 0.3023 0.71
12 3ats:A 352 52 0.2051 0.0455 0.3077 1.0 3att:A
13 8jfh:E 79 40 0.1667 0.1646 0.3250 1.2 8jfn:B
14 3ldh:A 329 40 0.1667 0.0395 0.3250 1.3
15 5xtg:B 233 42 0.1538 0.0515 0.2857 1.6
16 8ohd:B 403 49 0.2051 0.0397 0.3265 2.3 8oj0:B, 8oj5:B
17 8iuf:AB 88 75 0.1923 0.1705 0.2000 2.3 8j9h:AB, 8j9i:AB, 8j9j:AB
18 2eht:A 77 47 0.1538 0.1558 0.2553 3.1
19 4f4f:A 464 56 0.2308 0.0388 0.3214 3.2 4f4f:B
20 8ba0:U 85 27 0.1154 0.1059 0.3333 3.3 8ba0:T, 8esz:AC
21 4xlv:A 310 26 0.1154 0.0290 0.3462 3.6 2auh:A, 3bu3:A, 3bu5:A, 3bu6:A, 5e1s:A, 3ekk:A, 3ekn:A, 3eta:A, 3eta:B, 1gag:A, 5hhw:A, 1i44:A, 4ibm:A, 4ibm:B, 1ir3:A, 1rqq:A, 1rqq:B, 2z8c:A
22 4qsm:A 332 47 0.1667 0.0392 0.2766 4.9 4aj1:A, 4aj1:B, 4aj1:C, 4aj1:D, 4aj2:A, 4aj2:B, 4aj2:C, 4aj2:D, 4aj4:A, 4aj4:B, 4aj4:C, 4aj4:D, 4aje:A, 4aje:B, 4aje:C, 4aje:D, 4ajh:A, 4ajh:B, 4ajh:C, 4ajh:D, 4aji:A, 4aji:B, 4aji:C, 4aji:D, 4ajj:A, 4ajj:B, 4ajj:C, 4ajj:D, 4ajk:A, 4ajk:B, 4ajk:C, 4ajk:D, 4ajl:A, 4ajl:B, 4ajl:C, 4ajl:D, 4ajn:A, 4ajn:B, 4ajn:C, 4ajn:D, 4ajo:A, 4ajo:B, 4ajo:C, 4ajo:D, 4ajp:A, 4ajp:B, 4ajp:C, 4ajp:D, 4al4:A, 4al4:B, 4al4:C, 4al4:D, 6bad:A, 6bad:B, 6bad:C, 6bad:D, 6bag:A, 6bag:B, 6bag:C, 6bag:D, 6bax:A, 6bax:B, 6bax:C, 6bax:D, 6baz:A, 6baz:B, 6baz:C, 6baz:D, 6bb0:A, 6bb0:B, 6bb0:C, 6bb0:D, 6bb1:A, 6bb1:B, 6bb1:C, 6bb1:D, 6bb1:E, 6bb1:F, 6bb1:G, 6bb1:H, 6bb2:A, 6bb2:B, 6bb2:C, 6bb2:D, 6bb2:E, 6bb2:F, 6bb2:G, 6bb2:H, 6bb3:A, 6bb3:B, 6bb3:C, 6bb3:D, 9bk2:A, 9bk2:D, 9bk3:D, 8fw6:A, 8fw6:B, 3h3f:A, 3h3f:B, 3h3f:C, 3h3f:D, 3h3f:E, 3h3f:F, 3h3f:G, 3h3f:H, 1i10:A, 1i10:B, 1i10:C, 1i10:D, 1i10:E, 1i10:F, 1i10:G, 1i10:H, 4i8x:A, 4i8x:B, 4i8x:C, 4i8x:D, 4i8x:E, 4i8x:F, 4i8x:G, 4i8x:H, 4i9h:A, 4i9h:B, 4i9h:C, 4i9h:D, 4i9h:E, 4i9h:F, 4i9h:G, 4i9h:H, 4i9n:A, 4i9n:B, 4i9n:C, 4i9n:D, 4i9n:E, 4i9n:F, 4i9n:G, 4i9n:H, 4i9u:A, 4i9u:B, 4i9u:C, 4i9u:D, 4i9u:E, 4i9u:F, 4i9u:G, 4i9u:H, 5ixs:A, 5ixs:B, 5ixs:C, 5ixs:D, 5ixy:A, 5ixy:B, 5ixy:C, 5ixy:D, 4jnk:A, 4jnk:B, 4jnk:C, 4jnk:D, 5kkc:A, 5kkc:B, 5kkc:C, 5kkc:D, 4l4s:H, 4l4s:A, 9ldb:A, 9ldb:B, 9ldt:A, 9ldt:B, 7m2n:A, 7m2n:B, 7m2n:C, 7m2n:D, 4m49:A, 4m49:B, 4m49:C, 4m49:D, 6mv8:A, 6mv8:B, 6mv8:C, 6mv8:D, 6mva:A, 6mva:B, 6mva:C, 6mva:D, 5nqq:A, 5nqq:B, 5nqq:C, 5nqq:D, 4okn:A, 4okn:B, 4okn:C, 4okn:D, 4okn:E, 4okn:F, 4okn:G, 4okn:H, 6p6u:C, 6p6u:E, 6q0d:A, 6q0d:B, 6q0d:C, 6q0d:D, 6q0d:E, 6q0d:F, 6q13:A, 6q13:B, 6q13:C, 6q13:D, 4qo7:A, 4qo7:B, 4qo7:C, 4qo7:D, 4qo8:A, 4qo8:B, 4qo8:C, 4qo8:D, 4qsm:B, 4qsm:C, 4qsm:D, 4qsm:E, 4qsm:F, 4qsm:G, 4qsm:H, 4qt0:A, 4qt0:B, 4qt0:C, 4qt0:D, 4qt0:E, 4qt0:F, 4qt0:G, 4qt0:H, 4r68:A, 4r68:B, 4r68:C, 4r68:D, 4r69:A, 4r69:B, 4r69:C, 4r69:D, 4rls:A, 4rls:B, 4rls:C, 4rls:D, 6sbu:A, 6sbu:B, 6sbu:C, 6sbu:D, 6sbu:E, 6sbu:F, 6sbu:G, 6sbu:H, 6sbv:A, 6sbv:B, 6sbv:C, 6sbv:D, 6sbv:E, 6sbv:F, 6sbv:G, 6sbv:H, 5w8h:A, 5w8h:B, 5w8h:C, 5w8i:A, 5w8i:C, 5w8i:D, 5w8j:A, 5w8j:B, 5w8j:C, 5w8j:D, 5w8k:A, 5w8k:B, 5w8k:C, 5w8k:D, 5w8l:A, 5w8l:B, 5w8l:C, 5w8l:D, 5zjd:A, 5zjd:B, 5zjd:C, 5zjd:D, 5zjd:E, 5zjd:F, 5zjd:G, 5zjd:H, 5zjf:A, 5zjf:C, 4zvv:A, 4zvv:B, 4zvv:C, 4zvv:D
23 8kbc:B 132 42 0.1667 0.0985 0.3095 5.6 8kbc:G, 8kbc:J, 8kbc:A, 8kbc:H, 8kbc:I, 8kbc:L, 8kbc:C, 8kbc:E, 8kbc:K, 8kbc:D, 8kbc:F, 8kbd:A, 8kbd:H, 8kbd:I, 8kbd:B, 8kbd:G, 8kbd:J, 8kbd:L, 8kbd:C, 8kbd:E, 8kbd:K, 8kbd:D, 8kbd:F
24 5fxs:A 308 26 0.1282 0.0325 0.3846 5.7 4d2r:A, 3d94:A, 3f5p:A, 3f5p:B, 3f5p:C, 3f5p:D, 3f5p:E, 3f5p:F, 3f5p:G, 3f5p:H, 3f5p:I, 3f5p:J, 3f5p:K, 3f5p:M, 3f5p:L, 3f5p:R, 3f5p:S, 3f5p:T, 5fxq:A, 5fxr:A, 5hzn:A, 5hzn:B, 5hzn:C, 5hzn:D, 5hzn:E, 5hzn:F, 5hzn:G, 5hzn:H, 3i81:A, 1jqh:A, 1jqh:B, 1jqh:C, 1k3a:A, 3lvp:A, 3lvp:B, 3lvp:C, 3lvp:D, 3lw0:A, 3lw0:D, 3lw0:B, 3lw0:C, 3nw5:A, 3nw6:A, 3nw7:A, 3o23:A, 2oj9:A, 8pyi:AAA, 8pyi:BBB, 8pyi:CCC, 8pyi:DDD, 8pyi:EEE, 8pyi:FFF, 8pyi:GGG, 8pyi:HHH, 8pyj:AAA, 8pyk:AAA, 8pyl:AAA, 8pym:AAA, 8pyn:AAA, 3qqu:A, 3qqu:B, 3qqu:C, 3qqu:D, 2zm3:A, 2zm3:B, 2zm3:C, 2zm3:D
25 2w7y:A 389 63 0.2564 0.0514 0.3175 7.1 2w7y:B
26 5hv8:A 95 33 0.1282 0.1053 0.3030 7.7
27 7f2r:B 79 46 0.1538 0.1519 0.2609 8.1
28 2fac:A 77 27 0.1154 0.1169 0.3333 9.2 2fac:B, 2fad:A, 2fad:B, 2fae:A, 4keh:C, 4keh:D, 1l0i:A, 6n3p:I, 6n3p:L, 6n3p:J, 3ny7:B, 7nyw:G, 7nyx:G, 7nyy:G, 7nyz:G, 7nz0:G, 7nz2:G1, 7nz2:G2, 7nz2:G3, 7nz2:G4, 7nz3:G1, 7nz3:G2, 7nz4:G1, 7nz4:G2, 1t8k:A, 5usr:K, 5vcb:f, 5vcb:e, 5vcb:d, 5vcb:F, 5vcb:D, 5vcb:X, 6w1d:C, 6w98:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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