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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MSIVNILSVNVLNNPAKFSDPYKFEITFECLEPLKSDLEWKLTYVGSATSQSYDQILDTLLVGPIPIGINKFVFEADPPN
IDLLPQLSDVLGVTVILLSCAYEDNEFVRVGYYVNNEMEGLNLQEMDDAEIKKVKVDISKVWRSILAEKPRVTRFNIQWD

The query sequence (length=160) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2dze:A 160 160 1.0000 1.0000 1.0000 5.31e-116 2dze:B, 2z34:A, 2z34:B, 2z3f:A, 2z3f:H, 2z3f:B, 2z3f:C, 2z3f:D, 2z3f:E, 2z3f:F, 2z3f:G
2 6f0y:A 172 159 0.6375 0.5930 0.6415 2.76e-69 2ygv:A, 2ygv:D, 2ygv:B, 2ygv:C
3 2iij:A 156 160 0.5437 0.5577 0.5437 2.29e-58 8bv1:A, 8bv1:B, 8bv1:E, 8bv1:F, 8bv1:D, 8bv1:C, 8cj1:B, 8cj1:C, 8cj1:D, 8cj1:E, 8cj1:G, 8cj2:A, 8cj2:B, 8cj2:C, 8cj2:D, 8cj3:A, 6f0f:A, 6f0g:A, 6f0g:B, 6f0h:A, 6f0h:C, 2i32:A, 2i32:B, 7lo0:A, 7lo0:B, 7lo0:C, 7lo0:D, 7lo0:E, 7lo0:F, 7lo0:G, 7lo0:H, 6zuf:A, 6zuf:B
4 1qrl:A 214 115 0.1812 0.1355 0.2522 5.6 3otm:A, 3otz:A, 3ou9:A, 3oup:A, 3ow5:A, 1qq0:A, 1qre:A, 1qrf:A, 1qrg:A, 1qrm:A, 1thj:A, 1thj:B, 1thj:C
5 2yb0:E 264 135 0.2000 0.1212 0.2370 7.2 2cje:A, 2yay:A, 2yaz:A, 2yaz:B, 2yaz:D, 2yaz:E, 2yb0:A, 2yb0:B, 2yb0:D
6 4s1b:D 214 44 0.0813 0.0607 0.2955 8.4 4s1b:A, 4s1c:D, 4s1c:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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