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BioLiP
>protein
MSIILQILVVALIVYSFVLIVAVPITLSTASGWSKSKSSIVTASIGWVGMVLLTGVLNS

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4yuu:Z2 59 58 0.9831 0.9831 1.0000 6.98e-32 4yuu:z2
2 7oui:Z 62 59 0.3898 0.3710 0.3898 7.63e-11 3jcu:Z, 3jcu:z, 7oui:z, 5xnl:Z, 5xnl:z, 5xnm:Z, 5xnm:z
3 3a0b:Z 62 58 0.3729 0.3548 0.3793 2.84e-10 3a0b:z, 3a0h:Z, 3a0h:z, 2axt:Z, 2axt:z, 5b5e:Z, 5b5e:z, 5b66:Z, 5b66:z, 7cji:Z, 7cji:z, 7cjj:Z, 7cjj:z, 7cou:Z, 7cou:z, 7czl:z, 7d1t:Z, 7d1t:z, 7d1u:Z, 7d1u:z, 6dhe:Z, 6dhe:z, 6dhf:Z, 6dhg:Z, 6dhh:Z, 6dho:Z, 6dhp:Z, 5e79:Z, 5e79:z, 5e7c:Z, 5e7c:z, 7eda:Z, 9evx:Z, 9evx:z, 8ez5:Z, 8f4c:Z, 8f4d:Z, 8f4e:Z, 8f4f:Z, 8f4g:Z, 8f4h:Z, 8f4i:Z, 8f4j:Z, 8f4k:Z, 4fby:Z, 4fby:l, 8gn0:Z, 8gn1:z, 8gn1:Z, 8gn2:Z, 8gn2:z, 5gth:Z, 5gth:z, 5gti:Z, 5gti:z, 5h2f:Z, 5h2f:z, 8ir5:Z, 8ir5:z, 8ir6:Z, 8ir6:z, 8ir7:Z, 8ir7:z, 8ir8:Z, 8ir8:z, 8ir9:Z, 8ir9:z, 8ira:Z, 8ira:z, 8irb:Z, 8irb:z, 8irc:Z, 8irc:z, 8ird:Z, 8ird:z, 8ire:Z, 8ire:z, 8irf:Z, 8irf:z, 8irg:Z, 8irg:z, 8irh:Z, 8irh:z, 8iri:Z, 8iri:z, 4ixq:Z, 4ixq:z, 4ixr:Z, 4ixr:z, 6jlj:Z, 6jlj:z, 6jlk:Z, 6jlk:z, 6jll:Z, 6jll:z, 6jlm:Z, 6jlm:z, 6jln:Z, 6jln:z, 6jlo:Z, 6jlo:z, 6jlp:Z, 6jlp:z, 5kaf:Z, 5kaf:z, 5kai:Z, 5kai:z, 3kzi:Z, 5mx2:Z, 5mx2:z, 7nho:Z, 7nhp:Z, 7nhq:Z, 4pbu:Z, 4pbu:z, 4pj0:Z, 4pj0:z, 7rf1:Z, 7rf2:Z, 7rf3:Z, 7rf4:Z, 7rf4:z, 7rf5:Z, 7rf6:Z, 7rf7:Z, 7rf8:Z, 4rvy:Z, 4rvy:z, 5tis:Z, 4tnh:Z, 4tnh:z, 4tni:Z, 4tni:z, 4tnj:Z, 4tnj:z, 4tnk:Z, 4tnk:z, 4ub6:Z, 4ub6:z, 4ub8:z, 5v2c:Z, 5v2c:z, 4v62:AZ, 4v62:BZ, 4v82:AZ, 4v82:BZ, 6w1o:Z, 6w1p:Z, 6w1q:Z, 6w1q:z, 6w1r:Z, 6w1u:Z, 6w1v:Z, 5ws5:Z, 5ws5:z, 5ws6:Z, 5ws6:z, 3wu2:Z, 3wu2:z, 7yq7:Z, 7yq7:z, 5zzn:Z, 5zzn:z
4 7y5e:z6 60 55 0.4068 0.4000 0.4364 7.27e-10 7y5e:ZL, 7y7a:Z9, 7y7a:ZE, 7y7a:zO, 7y7a:zZ, 7y7a:Zm
5 8xlp:z 61 59 0.4407 0.4262 0.4407 1.26e-09 8xlp:Z
6 8wql:ZD 60 57 0.3898 0.3833 0.4035 2.08e-09 8wql:ZE, 8wql:Z1
7 8wb4:z 61 56 0.4068 0.3934 0.4286 4.08e-08 8wb4:Z, 8xr6:Z, 8xr6:z
8 7pi5:Z 61 59 0.3559 0.3443 0.3559 9.38e-08 7pi5:z, 7pin:Z, 7pin:Z1, 7pin:z1, 7piw:Z, 7piw:z, 7pnk:Z
9 7n8o:Z 60 57 0.3390 0.3333 0.3509 1.35e-07 7n8o:z, 7rcv:Z, 7rcv:z, 8tow:Z, 8tow:z
10 7ymi:Z 59 48 0.2542 0.2542 0.3125 5.18e-04 7ymi:z, 7ymm:1Z, 7ymm:2Z, 7ymm:3Z, 7ymm:4Z
11 8iwh:Z 61 40 0.2373 0.2295 0.3500 0.062 8j5k:Z, 8j5k:z, 6jlu:Z, 6jlu:z
12 4s2a:A 594 30 0.2034 0.0202 0.4000 0.23 3epm:A, 3epm:B, 3epn:A, 3epn:B, 3epo:A, 3epo:B
13 6j3y:Z 59 36 0.2034 0.2034 0.3333 2.6 6j3y:z, 6j3z:Z, 6j3z:z, 6j40:Z, 6j40:z, 7vd5:Z, 7vd5:z
14 4s28:A 520 30 0.2034 0.0231 0.4000 3.0 4n7q:A, 4s25:A, 4s26:A, 4s26:B, 4s27:A, 4s29:A
15 7f19:A 444 26 0.1695 0.0225 0.3846 4.1 2yxv:A, 2yxv:B, 2yxw:A, 2yxw:B
16 5b7e:A 477 26 0.1695 0.0210 0.3846 4.1 5b7f:A, 5b7m:A, 5b7m:B, 5b7m:C, 4ef3:A, 2fqd:A, 2fqe:A, 2fqf:A, 2fqg:A, 6im7:A, 1kv7:A, 1n68:A, 3nsc:A, 3nsd:A, 3nsy:A, 3nt0:A, 3pau:A, 3pav:A, 1pf3:A, 3qqx:A, 5ys1:A, 5ys5:A
17 3od3:A 488 26 0.1695 0.0205 0.3846 4.2 4e9q:A, 4e9r:A, 4e9s:A, 4e9t:A, 7f0v:A, 7f0v:B, 4hak:A, 4hal:A, 4ner:A, 3uaa:A, 3uab:A, 3uac:A, 3uad:A, 3uae:A
18 6ei9:A 306 26 0.1864 0.0359 0.4231 7.3 6ei9:B
19 5jio:A 467 46 0.2373 0.0300 0.3043 8.6 5k41:A, 5k42:A, 5k44:A, 5k5c:A, 5l3k:A, 5l3k:B, 5l3k:C, 5l3k:D, 5l3k:E, 5l3k:F, 5l3k:G, 5l3k:H
20 8t1b:A 644 50 0.2373 0.0217 0.2800 8.7 4dx2:A, 8fc7:A, 8fc7:B, 8fc7:C, 8fc7:D, 8fc8:A, 8fc8:B, 8fc8:D, 8fc8:C, 8fcb:A, 8fcb:B, 8fcb:D, 8fcb:C, 8ju5:D, 8ju5:B, 8ju6:A, 8ju6:B, 8ju6:D, 8ju6:C, 8jvj:A, 8jvj:B, 8jvj:C, 8jvj:D, 8t1b:B, 8t1b:D, 8t1b:C, 8t1d:A, 8t1d:B, 8t1d:C, 8t1d:D, 8t1e:A, 8t1e:B, 8t1e:C, 8t1e:D, 8t1f:A, 8t1f:B, 8t1f:C, 8t1f:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218