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BioLiP
>protein
MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNA
PML

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8c6j:d 84 82 0.9880 0.9762 1.0000 4.62e-58 7a5p:l, 7a5p:a, 7abg:e, 7abg:l, 7abi:l, 6ah0:h, 6ah0:T, 6ahd:g, 6ahd:h, 7b0y:i, 8c6j:n, 8ch6:j, 8ch6:3, 7dvq:h, 7evo:e, 9fmd:h, 9fmd:a, 8h6e:5g, 8h6e:4g, 8h6e:2g, 8h6j:5g, 8h6j:4g, 8h6j:2g, 8h6k:5g, 8h6k:2g, 8h6l:5g, 8h6l:2g, 8hk1:e, 8i0p:g, 8i0p:l, 8i0r:g, 8i0r:l, 8i0s:g, 8i0s:l, 8i0t:g, 8i0t:l, 8i0u:g, 8i0u:l, 8i0v:g, 8i0v:l, 8i0w:g, 8i0w:h, 6id1:a, 5mqf:l, 5o9z:W, 5o9z:e, 4pjo:A, 4pjo:a, 4pjo:O, 4pjo:o, 8q7q:d, 8q7v:d, 8q7w:d, 8q7x:d, 6qdv:n, 6qdv:d, 8qo9:23, 8qo9:53, 8qo9:43, 7qtt:j, 6qw6:43, 6qw6:53, 6qx9:13, 6qx9:53, 6qx9:23, 6qx9:43, 8qxd:23, 8qxd:43, 8qzs:53, 8qzs:23, 8qzs:43, 8r08:13, 8r08:23, 8r08:43, 8r09:23, 8r09:53, 8r09:43, 8r0a:53, 8r0a:23, 8r0a:43, 8r0b:23, 8r0b:43, 8r0b:53, 8rm5:23, 8rm5:43, 8ro2:a, 6v4x:A, 7vpx:e, 7vpx:j, 7w59:a, 7w59:h, 7w5a:a, 7w5a:h, 7w5b:a, 7w5b:h, 4wzj:A, 4wzj:H, 4wzj:O, 4wzj:AA, 4wzj:HH, 4wzj:OO, 4wzj:AAA, 4wzj:HHH, 4wzj:OOO, 4wzj:AAAA, 4wzj:HHHH, 4wzj:OOOO, 5xjc:a, 5xjc:h, 6y53:l, 6y5q:l, 8y6o:d, 8y6o:k, 8y6o:r, 8y7e:h, 5yzg:a, 5yzg:h, 5z56:a, 5z56:h, 5z57:a, 5z57:h, 5z58:a, 5z58:h
2 8ro0:a 81 79 0.7229 0.7407 0.7595 1.83e-42 8ro1:a
3 3jb9:D 96 77 0.6867 0.5938 0.7403 2.71e-39 3jb9:Z
4 6g90:d 93 80 0.4819 0.4301 0.5000 2.92e-31 7b9v:n, 7b9v:d, 6bk8:o, 6bk8:g, 7dco:l, 6exn:n, 6exn:d, 6g90:v, 5gam:d, 5gan:n, 5gan:d, 5gao:n, 5gm6:l, 5gmk:l, 5gmk:y, 6j6g:l, 6j6g:y, 6j6h:l, 6j6h:y, 6j6n:l, 6j6n:y, 6j6q:l, 6j6q:y, 3jcm:J, 3jcm:R, 5lj3:d, 5lj3:n, 5lj5:d, 5lj5:n, 5mps:d, 5mq0:n, 5mq0:d, 6n7p:N, 6n7r:N, 6n7x:N, 5nrl:v, 5nrl:n, 5nrl:d, 7oqb:v, 7oqc:d, 7oqe:d, 7oqe:v, 8w2o:N, 5wsg:l, 5wsg:U, 5y88:e, 5y88:l, 5ylz:e, 5ylz:l, 5zwm:S, 5zwm:d, 5zwm:l, 5zwn:d, 5zwo:d, 5zwo:S
5 6qw6:64 73 72 0.3012 0.3425 0.3472 2.83e-12 6qx9:64
6 5gan:4 74 71 0.2771 0.3108 0.3239 8.36e-08 4m7a:N, 4m7a:G, 4m7d:N, 5nrl:j, 5vsu:D
7 6aso:D 59 71 0.2651 0.3729 0.3099 1.19e-06
8 3jb9:F 82 71 0.2289 0.2317 0.2676 1.26e-05 3jb9:f
9 8ro0:c 80 71 0.2289 0.2375 0.2676 1.31e-05 8ro1:c
10 7abg:g 93 71 0.2771 0.2473 0.3239 2.06e-05 7a5p:n, 7abg:n, 7abi:n, 7abi:g, 6ah0:V, 6ahd:b, 7b0y:k, 8c6j:l, 8c6j:c, 8ch6:k, 8ch6:5, 7dvq:c, 7dvq:j, 9fmd:c, 9fmd:j, 8h6e:5b, 8h6e:4b, 8h6j:5b, 8h6j:4b, 8h6k:5b, 8h6l:5b, 8i0p:b, 8i0p:n, 8i0r:b, 8i0r:n, 8i0s:b, 8i0s:n, 8i0t:b, 8i0t:n, 8i0u:b, 8i0u:n, 8i0v:b, 8i0v:n, 8i0w:b, 8i0w:j, 6icz:j, 6id0:j, 6id1:j, 5mqf:g, 5o9z:n, 5o9z:g, 4pjo:C, 4pjo:c, 4pjo:Q, 4pjo:q, 8q7q:a, 8q7v:a, 8q7w:a, 8q7x:a, 8q91:i, 6qdv:l, 6qdv:h, 8qo9:21, 8qo9:51, 8qo9:41, 7qtt:k, 6qw6:41, 6qw6:51, 6qx9:11, 6qx9:51, 6qx9:21, 6qx9:41, 8qxd:21, 8qxd:41, 8qxd:51, 8qzs:51, 8qzs:21, 8r08:11, 8r08:41, 8r08:21, 8r08:51, 8r09:21, 8r09:51, 8r09:41, 8r0a:51, 8r0a:21, 8r0a:41, 8r0b:21, 8r0b:41, 8r0b:51, 8rc0:i, 8rm5:21, 8rm5:51, 8rm5:41, 8ro2:c, 7vpx:h, 7w59:c, 7w59:j, 7w5a:c, 7w5a:j, 7w5b:c, 7w5b:j, 4wzj:C, 4wzj:J, 4wzj:Q, 4wzj:CC, 4wzj:JJ, 4wzj:QQ, 4wzj:CCC, 4wzj:JJJ, 4wzj:QQQ, 4wzj:CCCC, 4wzj:JJJJ, 4wzj:QQQQ, 5xjc:c, 5xjc:j, 8y6o:b, 8y6o:i, 8y6o:p, 8y7e:j, 5yzg:c, 5yzg:j, 5z56:c, 5z56:j, 5z57:c, 5z57:j, 5z58:c, 5z58:j
11 5nrl:l 99 71 0.2651 0.2222 0.3099 6.03e-05 6bk8:h, 7dco:m, 6exn:h, 6g90:t, 5gam:h, 5gan:l, 5gan:h, 5gao:l, 5gm6:m, 5gmk:m, 5gmk:z, 5lj3:h, 5lj3:l, 5lj5:h, 5lj5:l, 5mps:h, 5mq0:h, 5nrl:t, 5nrl:h, 7oqb:t, 7oqe:t, 5wsg:m, 5wsg:V, 5y88:f, 5y88:m, 5ylz:f, 5ylz:m, 5zwm:Q, 5zwm:m, 5zwo:Q, 5zwo:m
12 6v4x:C 114 69 0.2048 0.1491 0.2464 6.76e-05
13 6g90:h 107 86 0.2892 0.2243 0.2791 0.005 6exn:l, 7oqc:h, 7oqe:h
14 8ro0:f 72 67 0.2169 0.2500 0.2687 0.034 8ro1:f
15 4dur:A 756 43 0.1566 0.0172 0.3023 0.055 1b2i:A, 1bui:A, 1cea:A, 1cea:B, 1ceb:A, 1ceb:B, 4cik:A, 6d3x:A, 6d3x:B, 6d3y:A, 6d3z:A, 6d40:A, 2doh:X, 2doi:X, 2doi:A, 4dur:B, 8f7u:A, 8f7u:B, 8f7v:A, 8f7v:B, 1hpk:A, 1i5k:A, 1i5k:B, 1ki0:A, 1pk4:A, 1pkr:A, 2pk4:A, 6q1u:A, 6q1u:B, 7ths:A, 7ths:B, 7uah:A, 7uah:B, 5ugd:A, 5ugg:A
16 6j6g:m 119 98 0.2771 0.1933 0.2347 0.14 7b9v:l, 7b9v:h, 6j6g:z, 6j6h:m, 6j6h:z, 6j6n:m, 6j6n:z, 6j6q:m, 6j6q:z, 6n7p:L, 6n7r:L, 6n7x:L, 8w2o:L, 5zwn:b
17 7nxd:B 690 23 0.1566 0.0188 0.5652 0.28 7ceb:B, 7cec:B, 9ckv:B, 7nwl:B, 3vi3:B, 3vi3:D, 3vi4:D, 3vi4:B, 4wjk:B, 4wk0:B, 4wk2:B, 4wk4:B
18 5tue:A 388 75 0.2651 0.0567 0.2933 0.28 5tue:B, 5tuf:A, 5tuf:B, 5tui:A, 5tui:B
19 2q1f:A 991 52 0.1687 0.0141 0.2692 2.3 2q1f:B
20 6qw6:62 95 47 0.1566 0.1368 0.2766 2.4 6ahd:q, 8h6e:6a, 8h6j:6a, 8h6k:6a, 8h6l:6a, 6qx9:62
21 1m8v:A 72 63 0.1687 0.1944 0.2222 2.7 1m8v:M, 1m8v:C, 1m8v:K, 1m8v:F, 1m8v:H, 1m8v:E, 1m8v:I, 1m8v:D, 1m8v:J, 1m8v:B, 1m8v:L, 1m8v:G, 1m8v:N
22 6qw6:66 72 67 0.2169 0.2500 0.2687 3.9 6qx9:66
23 5vsu:B 98 57 0.1566 0.1327 0.2281 4.3 6aso:B, 5gan:2, 4m7a:I, 4m7a:B, 4m7d:I, 4m7d:B, 5nrl:a
24 8hkx:AS5P 204 58 0.2289 0.0931 0.3276 4.3 8hky:AS5P, 8hkz:AS5P, 8hl1:AS5P, 8hl2:AS5P, 8hl3:AS5P, 8hl4:AS5P, 8hl5:AS5P, 8wkp:AS5P, 8wq2:AS5P, 8wq4:AS5P
25 6iv9:A 874 43 0.1566 0.0149 0.3023 9.3 6iv8:A, 6iv8:C
26 1kc7:A 872 36 0.1205 0.0115 0.2778 9.4
27 7moa:D 638 25 0.1325 0.0172 0.4400 9.9 1bht:A, 1bht:B, 5cp9:B, 5cs3:B, 5cs5:B, 5ct3:B, 1gmn:B, 1gmn:A, 1gmo:B, 1gmo:H, 1gmo:F, 1gmo:C, 1gmo:G, 1gmo:A, 1gmo:D, 1gmo:E, 6lz9:B, 3mkp:C, 3mkp:A, 7mo7:A, 7mo8:A, 7mo9:A, 7moa:A, 4o3t:A, 4o3u:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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