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BioLiP
>protein
MSGWVTVAGLGPGREDLVTPEVTAALAEATDIVGYIPYVARIAPREGLTLHPTDNRVELDRATHALEMAAEGRRVVVVSS
GDPGVFAMASALFEALEAHPEHAGTEIRILPGITAMLAAAAAAGAPLGHDFCAINLSDNLKPFEILEKRLRHAARGDFAM
AFYNPRSKSRPHQFTRVLEILREECEPGRLILFARAVTTPEQAISVVELRDATPEMADMRTVVLVGNAATRRVGPWVYTP
RG

The query sequence (length=242) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3nut:C 242 242 1.0000 1.0000 1.0000 5.87e-177 3nut:A, 3nut:B, 3nut:D
2 2zvb:A 259 266 0.3719 0.3475 0.3383 7.99e-37 2zvc:A
3 1pjq:B 455 138 0.1818 0.0967 0.3188 2.46e-07 6p5x:A, 6p5x:B, 6p5z:A, 6p5z:B, 6p7c:A, 6p7c:B, 6p7d:A, 6p7d:B, 1pjs:A, 1pjs:B, 1pjt:A, 1pjt:B, 6pqz:A, 6pqz:B, 6pr0:A, 6pr0:B, 6pr1:A, 6pr1:B, 6pr2:A, 6pr2:B, 6pr3:A, 6pr3:B, 6pr4:A, 6pr4:B, 6ulu:A, 6ulu:B, 6veb:A, 6veb:B
4 2e0n:B 238 140 0.1983 0.2017 0.3429 8.20e-07 2e0n:A
5 2ybo:A 248 170 0.2025 0.1976 0.2882 9.38e-07 2ybq:A
6 2qbu:A 228 149 0.1818 0.1930 0.2953 2.03e-04 2qbu:B
7 1s4d:E 265 136 0.1736 0.1585 0.3088 5.90e-04 1s4d:A, 1s4d:B, 1s4d:D, 1s4d:F, 1s4d:G, 1s4d:H, 1s4d:I, 1s4d:J, 1s4d:K, 1s4d:L, 1s4d:M
8 1cbf:A 239 117 0.1446 0.1464 0.2991 0.028 2cbf:A
9 6n3l:A 231 77 0.0868 0.0909 0.2727 1.4 6n3l:B
10 1a27:A 285 78 0.1074 0.0912 0.3333 2.6 6cgc:A, 6cgc:B, 6cge:A, 6cge:B, 3dey:X, 1dht:A, 3dhe:A, 6dtp:A, 1equ:A, 1equ:B, 1fds:A, 1fdt:A, 1fdu:A, 1fdu:B, 1fdu:C, 1fdu:D, 1fdv:A, 1fdv:B, 1fdv:C, 1fdv:D, 1fdw:A, 3hb4:X, 3hb5:X, 1i5r:A, 1iol:A, 1jtv:A, 3klm:X, 3klp:X, 3km0:A, 3km0:B, 6mnc:B, 6mne:A, 6mne:B, 1qyv:A, 1qyw:A, 1qyx:A, 7x3z:A, 7x3z:B
11 1izc:A 299 28 0.0537 0.0435 0.4643 3.6
12 8gad:A 105 27 0.0537 0.1238 0.4815 4.0 8gad:B
13 2bb3:A 194 57 0.0785 0.0979 0.3333 5.9 2bb3:B
14 5jxd:A 186 21 0.0413 0.0538 0.4762 6.6
15 2m0v:A 128 40 0.0537 0.1016 0.3250 8.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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