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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MSEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVINCAIPKGLKYNQATQTFHQW
RDARQVYGLNFGSKEDANVFASAMMHALEVL

The query sequence (length=111) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7aki:A 113 111 1.0000 0.9823 1.0000 1.27e-82 9c66:A, 1evh:A, 4my6:A, 4my6:B, 5n91:B, 5n91:A, 5n9c:A, 5n9c:B, 5n9p:B, 5n9p:A, 5naj:A, 5naj:B, 5naj:D, 5naj:C, 5nbf:A, 5nbx:A, 5nbx:B, 5nc2:A, 5nc2:B, 5nc7:C, 5nc7:A, 5nc7:B, 5nc7:D, 5ncf:A, 5ncf:B, 5ncg:A, 5ncg:B, 5ncp:A, 5nd0:A, 5nd0:B, 5ndu:A, 5ndu:B, 5neg:A, 5neg:B, 6rcf:A, 6rcj:A, 6rd2:B, 6rd2:A, 6xvt:A, 6xvt:B, 6xxr:B, 6xxr:A
2 1qc6:A 108 111 0.7027 0.7222 0.7027 8.83e-56 1qc6:B
3 6v65:A 110 107 0.3243 0.3273 0.3364 6.97e-19 6v6f:A
4 5zz9:B 114 110 0.3153 0.3070 0.3182 3.51e-11 1i7a:A, 1i7a:B, 1i7a:D, 5zz9:A, 5zz9:C
5 1ddv:A 104 107 0.2883 0.3077 0.2991 4.14e-08
6 7uoo:w 194 27 0.0991 0.0567 0.4074 0.55 5a53:A, 7bt6:w, 7btb:w, 6ft6:w, 3jct:w, 6m62:w, 7oh3:w, 7ohq:w, 7oht:w, 7ug6:w, 7uqb:w, 7uqz:w, 7v08:w
7 6fnd:A 423 42 0.1441 0.0378 0.3810 1.2 6fnd:B, 6fnd:C, 6fnd:D
8 3ieh:A 268 99 0.2072 0.0858 0.2323 2.2
9 4era:A 332 57 0.1171 0.0392 0.2281 3.4 4epk:A, 4epk:B, 4era:B, 4erg:A, 4erg:B, 4eri:A, 4eri:B, 2hbv:A, 2hbv:B, 2hbx:A, 2hbx:B, 4ifk:A, 4ifk:B, 4ifo:A, 4ifo:B, 4ifr:A, 4ifr:B, 4ig2:A, 4ig2:B, 7k12:A, 7k13:A, 7k13:B, 7k13:C, 6mgs:A, 6mgs:B, 6mgs:C, 6mgt:A, 6mgt:B
10 5u7w:A 404 28 0.1081 0.0297 0.4286 4.0 5u7v:A
11 5cee:A 387 25 0.1081 0.0310 0.4800 6.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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