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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MSDYENDDECWSVLEGFRVTLTSVIDPSRITPYLRQCKVLNPDDEEQVLSDPNLVIRKRKVGVLLDILQRTGHKGYVAFL
ESLELYYPQLYKKVTGK

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6n2m:A 142 96 0.9897 0.6761 1.0000 3.17e-68 6e25:A, 6n2m:B
2 3jb9:X 1195 57 0.2062 0.0167 0.3509 0.018
3 8wuw:H 529 43 0.1649 0.0302 0.3721 0.030 8wuw:A, 8wuw:B, 8wuw:I, 8wuw:C, 8wuw:J, 8wuw:D, 8wuw:K, 8wuw:E, 8wuw:L, 8wuw:F, 8wuw:M, 8wuw:G, 8wuw:N, 8wux:A, 8wux:H, 8wux:B, 8wux:I, 8wux:C, 8wux:J, 8wux:D, 8wux:K, 8wux:E, 8wux:L, 8wux:F, 8wux:M, 8wux:G, 8wux:N
4 6xr0:M 683 53 0.1649 0.0234 0.3019 0.33
5 3u67:A 218 69 0.2165 0.0963 0.3043 0.39 3h80:A, 3q5j:A, 3q5k:A, 3q5l:A, 3q5l:B, 3q5l:C, 3q5l:D
6 4v4o:F 529 53 0.1959 0.0359 0.3585 0.45 4v4o:A, 4v4o:B, 4v4o:C, 4v4o:D, 4v4o:E, 4v4o:G, 4v4o:a, 4v4o:b, 4v4o:c, 4v4o:d, 4v4o:e, 4v4o:f, 4v4o:g
7 2pf4:E 163 37 0.1443 0.0859 0.3784 0.94 2pf4:F, 2pkg:C, 2pkg:D
8 7jm7:A 683 33 0.1443 0.0205 0.4242 0.97 7cq5:C, 7cq5:D, 7cq7:C, 7cq7:D, 7jm7:C
9 8wuc:A 528 64 0.1856 0.0341 0.2812 1.1 8wuc:B, 8wuc:C, 8wuc:D, 8wuc:E, 8wuc:F, 8wuc:G, 8wuc:H, 8wuc:I, 8wuc:J, 8wuc:K, 8wuc:L, 8wuc:M, 8wuc:N
10 2pz8:A 280 31 0.1546 0.0536 0.4839 2.0 2pz8:B, 2pza:A, 2pza:B
11 6elz:m 645 41 0.1340 0.0202 0.3171 3.3 6em5:m, 7ohr:m, 7ohv:m
12 8ova:AZ 58 37 0.1134 0.1897 0.2973 3.5 8ove:AZ
13 6cb1:s 512 40 0.1340 0.0254 0.3250 3.8 6c0f:s
14 6rax:4 626 27 0.1134 0.0176 0.4074 5.8 6raw:4, 6ray:4, 6raz:4
15 3ba0:A 365 17 0.0928 0.0247 0.5294 10.0 8b2n:A, 8b2n:C, 5cxa:A, 5czm:A, 5d2b:A, 5d3c:A, 4efs:A, 3ehx:A, 3ehy:A, 6ekn:A, 6ela:A, 6ela:B, 6ela:C, 6ela:D, 6enm:A, 6enm:B, 6eox:A, 3f15:A, 3f16:A, 3f17:A, 3f18:A, 3f19:A, 3f1a:A, 4gql:A, 4gr0:A, 4gr3:A, 4gr8:A, 4guy:A, 4h30:A, 4h30:B, 4h49:A, 4h49:B, 4h49:C, 4h49:D, 4h76:A, 4h84:A, 4h84:B, 2hu6:A, 4i03:A, 5i0l:A, 5i0l:B, 5i2z:A, 5i2z:B, 5i2z:C, 5i2z:D, 5i3m:A, 5i3m:B, 5i3m:C, 5i3m:D, 5i43:A, 5i43:B, 5i43:C, 5i43:D, 5i4o:A, 5i4o:C, 5i4o:B, 5i4o:D, 4ijo:A, 1jiz:A, 1jiz:B, 1jk3:A, 2jxy:A, 2k2g:A, 2k9c:A, 2krj:A, 5l79:A, 5l7f:A, 5l7f:B, 5lab:A, 3lik:A, 3lil:A, 3lir:A, 3ljg:A, 3lk8:A, 3lka:A, 2mlr:A, 2mls:A, 3n2u:A, 3n2v:A, 5n5j:A, 5n5k:A, 2n8r:A, 3nx7:A, 1os2:A, 1os2:B, 1os2:C, 1os2:D, 1os2:E, 1os2:F, 1os9:A, 1os9:B, 1os9:C, 1os9:D, 1os9:E, 1os9:F, 7ovy:A, 2oxu:A, 2oxw:A, 2oxz:A, 2poj:A, 6rd0:A, 8rij:A, 6rly:A, 1rmz:A, 1ros:A, 1ros:B, 3rts:A, 3rtt:A, 3ts4:A, 3tsk:A, 1utt:A, 1utz:A, 1utz:B, 3uvc:A, 3uvc:B, 2w0d:A, 2w0d:B, 2w0d:C, 2w0d:D, 2wo8:A, 2wo8:B, 2wo8:C, 2wo8:D, 2wo9:A, 2wo9:B, 2wo9:C, 2wo9:D, 2woa:A, 2woa:B, 2woa:C, 2woa:D, 1y93:A, 1ycm:A, 2z2d:A, 1z3j:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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