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BioLiP
>protein
MSDNIRRSMPLFPIGIVMQLTELSARQIRYYEENGLIFPARTEGNRRLFSFHDVDKLLEIKHLIEQGVNMAGIKQILAKA
EAEP

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4r4e:B 84 84 1.0000 1.0000 1.0000 1.63e-58
2 7tec:A 72 69 0.5595 0.6528 0.6812 1.13e-30
3 7tea:B 78 77 0.4881 0.5256 0.5325 2.64e-25 7tea:E, 7tea:A, 7tea:C
4 4r24:B 85 75 0.4286 0.4235 0.4800 6.34e-19 4r22:B
5 5c8d:E 280 76 0.3452 0.1036 0.3816 3.36e-05 8c31:A, 8c31:B, 8c31:C, 8c31:D, 8c32:A, 8c32:B, 8c32:C, 8c32:D, 8c33:A, 8c33:B, 8c33:C, 8c33:D, 8c34:A, 8c34:B, 8c34:C, 8c34:D, 8c35:A, 8c35:B, 8c35:C, 8c35:D, 8c36:A, 8c36:B, 8c36:C, 8c36:D, 8c37:A, 8c37:B, 8c37:C, 8c37:D, 8c73:A, 8c73:B, 8c73:C, 8c73:D, 8c76:A, 8c76:B, 8c76:C, 8c76:D, 5c8a:A, 5c8a:B, 5c8a:C, 5c8a:D, 5c8d:A, 5c8d:B, 5c8d:C, 5c8d:D, 5c8d:F, 5c8d:G, 5c8d:H, 5c8e:A, 5c8e:B, 5c8e:C, 5c8e:E, 5c8e:F, 5c8e:G, 5c8e:D, 5c8e:H, 5c8f:A, 3whp:A
6 6jni:A 145 67 0.2500 0.1448 0.3134 1.52e-04 6jgw:B, 6jgw:A, 6jgx:A, 6jgx:B, 6jni:B, 6jni:H, 6jni:C, 6jni:D, 6jni:E, 6jni:F, 6jni:G, 6jyw:A, 6jyw:B
7 5gpe:D 129 68 0.2500 0.1628 0.3088 2.06e-04 5gpe:A, 5gpe:B, 5gpe:C, 5gpe:E, 5gpe:F, 5gpe:G, 5gpe:H
8 4wlw:A 130 58 0.2143 0.1385 0.3103 3.80e-04 7c17:G, 7c17:H, 6ldi:G, 6ldi:H, 1q05:A, 1q05:B, 4wls:A, 4wls:B, 6xh7:G, 6xh7:H, 6xh8:G, 6xh8:H
9 2vz4:A 100 50 0.1667 0.1400 0.2800 0.011
10 7xn2:A 148 55 0.1905 0.1081 0.2909 0.037
11 1r8d:A 109 67 0.2262 0.1743 0.2836 0.050 1r8d:B
12 3gp4:A 132 57 0.2381 0.1515 0.3509 0.11 3gp4:B
13 5xbt:A 271 68 0.2143 0.0664 0.2647 0.16 5xbi:A, 5xbi:B, 5xbt:B, 5xql:A
14 5n61:Q 389 53 0.2143 0.0463 0.3396 0.23
15 4ua1:B 125 67 0.2619 0.1760 0.3284 0.44 4ua1:A
16 2zhg:A 121 66 0.2143 0.1488 0.2727 0.85 2zhh:A
17 6xl5:G 268 66 0.1786 0.0560 0.2273 1.1 6wl5:A, 6wl5:B, 6wl5:C, 6wl5:D, 6xl5:H, 6xl6:G, 6xl6:H, 6xl9:G, 6xl9:H, 6xla:G, 6xla:H, 6xlj:G, 6xlj:H, 6xlk:G, 6xlk:H
18 5f84:A 365 47 0.1905 0.0438 0.3404 2.7 5f85:A, 5f87:A, 5f87:B, 5f87:C, 5f87:D, 5f87:E, 5f87:F
19 6sus:A 258 27 0.1190 0.0388 0.3704 3.3 5cvw:A, 5cxl:A, 5cxl:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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