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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MSDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRAVKEFEANG

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1e7j:A 74 74 1.0000 1.0000 1.0000 5.16e-49 3nm9:D, 3nm9:G, 3nm9:J, 3nm9:P, 3nm9:M, 3nm9:A, 1qrv:A, 1qrv:B, 8r1x:A
2 1j5n:A 93 62 0.3649 0.2903 0.4355 2.06e-10
3 5jh0:D 157 69 0.3378 0.1592 0.3623 2.79e-09 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
4 5jh0:D 157 68 0.1892 0.0892 0.2059 1.2 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
5 6cij:N 133 39 0.2568 0.1429 0.4872 2.40e-08 5zdz:N, 5ze1:N, 5ze2:N
6 6cij:N 133 68 0.3108 0.1729 0.3382 9.15e-05 5zdz:N, 5ze1:N, 5ze2:N
7 2gzk:A 159 70 0.4054 0.1887 0.4286 2.75e-08 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
8 2gzk:A 159 52 0.2027 0.0943 0.2885 1.13e-05 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
9 6cik:N 90 62 0.3514 0.2889 0.4194 1.78e-07 6cg0:N, 6cim:N
10 1gt0:D 79 46 0.2162 0.2025 0.3478 3.61e-06 8bx1:E, 8bx2:E, 6ht5:D, 1o4x:B, 6t90:L, 6yov:L
11 6t78:A 77 43 0.2162 0.2078 0.3721 6.79e-06 6t78:B, 3u2b:C
12 4s2q:D 76 43 0.2027 0.1974 0.3488 9.61e-06 4euw:A
13 4qr9:A 75 71 0.2838 0.2800 0.2958 1.36e-05 4qr9:B
14 6l6y:D 80 46 0.1757 0.1625 0.2826 1.19e-04 4a3n:A, 3f27:D, 6l6y:F
15 6hb4:A 197 44 0.2027 0.0761 0.3409 7.73e-04 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
16 6hb4:A 197 69 0.3108 0.1168 0.3333 0.67 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
17 5ze0:N 118 60 0.3378 0.2119 0.4167 0.002 1ckt:A
18 4y60:C 76 41 0.1486 0.1447 0.2683 0.009
19 7m5w:A 138 66 0.2432 0.1304 0.2727 0.013 6jrp:A, 6jrp:D, 6jrp:G, 6jrp:J
20 4bmv:C 258 38 0.1757 0.0504 0.3421 1.6 4bmv:A, 4bmv:B, 4bmv:D, 4bmv:E, 4bmv:F, 4bmv:G, 4bmv:H, 4bmv:I, 4bmv:J
21 4dpu:A 330 69 0.2432 0.0545 0.2609 4.0 4dpt:B, 4dpu:B, 4dpw:A, 4dpw:B, 4dpw:C, 4dpw:D, 4dpw:E, 4dpw:F, 4dpw:G, 4dpw:H, 4dpy:A, 4dpy:B, 4du7:A, 4du7:B, 4du8:A, 4du8:B, 3qt6:A, 3qt6:B, 3qt7:A, 3qt7:B, 3qt8:A, 3qt8:B
22 2lef:A 86 41 0.1486 0.1279 0.2683 5.5
23 2vdv:E 216 41 0.1892 0.0648 0.3415 6.5 2vdv:F
24 1r44:A 202 38 0.1486 0.0545 0.2895 7.2 1r44:B, 1r44:C, 1r44:D, 1r44:E, 1r44:F
25 2fws:A 139 39 0.1622 0.0863 0.3077 8.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218