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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MSDIVYMGNKALYLILIFSLWPVGIATVIGLSIGLLLPFGIKLIGVSISLLLLSGWYGEVLLSFCHEIMFLIKSG

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8axk:H 75 75 1.0000 1.0000 1.0000 4.91e-46
2 8axk:J 67 75 0.8933 1.0000 0.8933 1.26e-38 8axk:I
3 2c7v:C 260 47 0.2133 0.0615 0.3404 1.8 3bmc:A, 3bmc:B, 3bmc:C, 3bmc:D, 3bmn:A, 3bmn:B, 3bmn:C, 3bmn:D, 3bmo:A, 3bmo:B, 3bmo:C, 3bmo:D, 3bmq:A, 3bmq:B, 3bmq:C, 3bmq:D, 2c7v:A, 2c7v:B, 2c7v:D, 4cl8:A, 4cl8:B, 4cl8:C, 4cl8:D, 4cld:A, 4cld:B, 4cld:C, 4cld:D, 4cle:A, 4cle:B, 4cle:C, 4cle:D, 4clh:A, 4clh:B, 4clh:C, 4clh:D, 4clo:A, 4clo:B, 4clo:C, 4clo:D, 4clr:A, 4clr:B, 4clr:C, 4clr:D, 4clx:A, 4clx:B, 4clx:C, 4clx:D, 4cm1:A, 4cm1:B, 4cm1:C, 4cm1:D, 4cm3:A, 4cm3:B, 4cm3:C, 4cm3:D, 4cm4:A, 4cm4:B, 4cm4:C, 4cm4:D, 4cm5:A, 4cm5:B, 4cm5:C, 4cm5:D, 4cm6:A, 4cm6:B, 4cm6:C, 4cm6:D, 4cm7:A, 4cm7:B, 4cm7:C, 4cm7:D, 4cm8:A, 4cm8:B, 4cm8:C, 4cm8:D, 4cm9:A, 4cm9:B, 4cm9:C, 4cm9:D, 4cma:A, 4cma:B, 4cma:C, 4cma:D, 4cmb:A, 4cmb:B, 4cmb:C, 4cmb:D, 4cmc:A, 4cmc:B, 4cmc:C, 4cmc:D, 4cme:A, 4cme:B, 4cme:C, 4cme:D, 4cmg:A, 4cmg:B, 4cmg:C, 4cmg:D, 4cmi:A, 4cmi:B, 4cmi:C, 4cmi:D, 4cmj:A, 4cmj:B, 4cmj:C, 4cmj:D, 4cmk:A, 4cmk:B, 4cmk:C, 4cmk:D, 6gck:A, 6gck:B, 6gck:C, 6gck:D, 6gcl:A, 6gcl:B, 6gcl:C, 6gcl:D, 6gcp:A, 6gcp:B, 6gcp:C, 6gcp:D, 6gcq:A, 6gcq:B, 6gcq:C, 6gcq:D, 6gd0:A, 6gd0:B, 6gd0:D, 6gd4:A, 6gd4:B, 6gd4:C, 6gd4:D, 6gdo:A, 6gdo:B, 6gdo:C, 6gdo:D, 6gdp:A, 6gdp:B, 6gdp:C, 6gdp:D, 6gex:A, 6gex:B, 6gex:C, 6gex:D, 6gey:A, 6gey:B, 6gey:C, 6gey:D, 3gn1:A, 3gn1:B, 3gn1:C, 3gn1:D, 3gn2:A, 3gn2:B, 3gn2:C, 3gn2:D, 6hnc:A, 6hnc:B, 6hnc:C, 6hnc:D, 6hnr:A, 6hnr:B, 6hnr:C, 6hnr:D, 6how:A, 6how:B, 6how:D, 5izc:A, 5izc:B, 5izc:D, 5jcj:A, 5jcj:B, 5jcj:D, 5jcx:A, 5jcx:B, 5jcx:D, 5jdc:A, 5jdc:B, 5jdc:D, 5jdi:A, 5jdi:B, 5jdi:C, 5jdi:D, 3jq6:A, 3jq6:B, 3jq6:C, 3jq6:D, 3jq7:A, 3jq7:B, 3jq7:D, 3jq8:A, 3jq8:B, 3jq8:C, 3jq8:D, 3jq9:A, 3jq9:B, 3jq9:C, 3jq9:D, 3jqa:A, 3jqa:B, 3jqa:C, 3jqa:D, 3jqb:A, 3jqb:B, 3jqb:C, 3jqb:D, 3jqc:A, 3jqc:B, 3jqc:C, 3jqc:D, 3jqd:A, 3jqd:B, 3jqd:C, 3jqd:D, 3jqe:A, 3jqe:B, 3jqe:C, 3jqe:D, 3jqf:A, 3jqf:B, 3jqf:C, 3jqf:D, 3jqg:A, 3jqg:B, 3jqg:C, 3jqg:D, 5k6a:A, 5k6a:B, 5k6a:D, 3mcv:A, 3mcv:B, 3mcv:C, 3mcv:D, 8of2:A, 8of2:B, 8of2:C, 8of2:D, 7opj:A, 7opj:B, 7opj:C, 7opj:D, 6rx0:A, 6rx0:B, 6rx0:D, 6rx5:A, 6rx5:B, 6rx5:D, 6rx6:A, 6rx6:B, 6rx6:C, 6rx6:D, 6tbx:A, 6tbx:B, 6tbx:D, 2vz0:A, 2vz0:B, 2vz0:C, 2vz0:D, 4wcd:A, 4wcd:B, 4wcd:D, 4wcf:A, 4wcf:B, 4wcf:C, 4wcf:D, 2wd7:A, 2wd7:B, 2wd7:C, 2wd7:D, 2wd8:A, 2wd8:B, 2wd8:C, 2wd8:D, 2x9g:A, 2x9g:B, 2x9g:C, 2x9g:D, 2x9n:A, 2x9n:B, 2x9n:C, 2x9n:D, 2x9v:A, 2x9v:B, 2x9v:C, 2x9v:D, 2yhi:A, 2yhi:B, 2yhi:C, 2yhi:D, 2yhu:A, 2yhu:B, 2yhu:C, 2yhu:D
4 3m1c:A 719 46 0.2000 0.0209 0.3261 4.3
5 2kpl:A 129 48 0.1600 0.0930 0.2500 5.8
6 7a0r:Q 93 32 0.1200 0.0968 0.2812 6.2 7a0s:Q, 7a18:Q, 3cf5:Q, 2d3o:R, 3dll:Q, 5dm6:Q, 5dm7:Q, 4io9:Q, 4ioa:Q, 4ioc:Q, 5jvg:Q, 5jvh:Q, 3pio:Q, 3pip:Q, 4u67:Q, 4v4g:BU, 4v4g:DU, 4v4g:FU, 4v4g:HU, 4v4g:JU, 4wfn:Q, 1xbp:R, 2zjp:Q, 2zjq:Q, 2zjr:Q

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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