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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MSDILQELLRVSEKAANIARACRQQETLFQLDFKTLAAVLVQEVIKENMENKFPGLGKKIFGEESNELTNDLGEKIIMRL
GPTEEETVALLSKVLNGNKLASEALAKVVHQDVFFSDPALDSVEINIPQDILGIWVDPIDSTYQYIKGSADITPNQGIFP
SGLQCVTVLIGVYDIQTGVPLMGVINQPFVSQDLHTRRWKGQCYWGLSYLGTNIHSLLPPSVVISTSEKETRIFRAAGAG
YKSLCVILGLADIYIFSEDTTFKWDSCAAHAILRAMGGGMVDLKECLERPQLVYHVGNQWANKGGLIAYRSEKQLETFLS
RLLQH

The query sequence (length=325) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7kir:A 326 326 1.0000 0.9969 0.9969 0.0 7kio:A
2 1inp:A 400 392 0.9969 0.8100 0.8265 0.0
3 2wef:A 303 213 0.1846 0.1980 0.2817 1.48e-16 1jp4:A
4 4qxd:B 289 161 0.1200 0.1349 0.2422 6.49e-05 4qxd:A
5 5ci8:A 117 98 0.0892 0.2479 0.2959 0.091 5ci9:A
6 4iu2:A 209 124 0.1015 0.1579 0.2661 0.33 8ajy:A, 8ajy:C, 4iu3:A
7 8c6e:A 124 32 0.0369 0.0968 0.3750 0.41 3q8i:A
8 9evq:B 214 112 0.1046 0.1589 0.3036 0.72 9evq:A, 9f5q:A, 9f5q:B
9 5eq9:B 260 69 0.0646 0.0808 0.3043 1.1 5eq8:A, 5eq9:A, 5eq9:C, 5eq9:D, 5t3j:A
10 2p3n:A 256 166 0.1200 0.1523 0.2349 2.3 2p3n:B, 2p3n:C, 2p3n:D
11 6ey7:B 227 69 0.0585 0.0837 0.2754 4.3 6ey7:A, 6ey7:C, 6ey7:D, 3n4p:A, 3n4p:B, 3n4p:C, 3n4p:D, 3n4q:A, 3n4q:B, 3n4q:C, 3n4q:D
12 7q3e:D 226 45 0.0462 0.0664 0.3333 8.7
13 6ahr:L 362 97 0.0831 0.0746 0.2784 8.8 6ahu:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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