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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MSCAEKLLKVLSFGLWNPTYSRSERQSFQELLTVLEPVYPLPNELGRVSARFSDGSSLRISVTNSESIEAEIRTPDNEKI
TVLLESNEQNRLLQSLPIDRHMPYIQVHRALSEMDLTDTTSMRNLLGFTSKLSTTLIPHNAQTDPLSGPTPFSSIFMDTC
RGLGNAKLSLNGVDIPANAQMLLRDALGLKDTHSSPSRNVIDHGISRHDAEQIARESSGSDNQKAEVVEFLCHPEAATAI
CSAFYQSFNVPALTLTHERISKASEYNAPNACINISISQSSDGNIYVTSHTGVLIMAPEDRPNEMGMLTNRTSYEVPQGV
KCTIDEMVRALQPRYAASETYLQN

The query sequence (length=344) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3pcs:B 355 350 0.9709 0.9408 0.9543 0.0 4fma:A, 4fma:B, 4fma:C, 4fma:D, 4fma:E, 4fma:F, 4fma:H, 4fma:I, 4fma:J, 4fma:L, 4fmd:E, 3pcs:A, 3pcs:C, 3pcs:D
2 4fmb:A 351 346 0.2093 0.2051 0.2081 0.24 4fmb:C, 4fmb:E
3 5nuo:D 200 78 0.0581 0.1000 0.2564 0.69 8i8r:D, 5nuo:B, 5nuo:F, 5nup:E, 5nur:D
4 5hm3:A 625 80 0.0669 0.0368 0.2875 1.2 5ey9:A, 5ey9:B
5 2wtk:B 311 80 0.0552 0.0611 0.2375 1.4 3gni:B, 8vsu:B, 2wtk:E
6 5x9d:A 302 106 0.0843 0.0960 0.2736 2.6 7f4c:A, 7f4c:B
7 6z1p:AB 264 125 0.0756 0.0985 0.2080 2.7
8 5flg:A 253 58 0.0436 0.0593 0.2586 4.6 5flg:B, 5fll:A, 5fll:B, 5fm0:A, 5fm0:B, 5g1f:A, 5g1f:B
9 8shj:C 306 100 0.0698 0.0784 0.2400 8.9 8t55:C
10 6hzz:B 516 41 0.0378 0.0252 0.3171 9.5 6hzz:A, 6i01:A, 6i01:B, 6i02:A, 6i02:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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