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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MSCAEKLLKVLSFGLWNPTYSRSERQSFQELLTVLEPVYPLPNELGRVSARFSDGSSLRISVTNSESIEAEIRTPDNEKI
TVLLESNEQNRLLQSLPIDRHMPYIQVHRALSEMDLTDTTSMRNLLGFTSKLSTTLIPHNAQTDPLSGPTPFSSIFMDTC
RGLGNAKLSLNGVDIPANAQMLLRDALGLKDTHSSPSRNVIDHGISRHDAEQIARESSGSDNQKAEVVEFLCHPEAATAI
CSAFYQSFNVPALTLTHERISKASEYNAERDTPNACINISISQSSDGNIYVTSHTGVLIMAPEDRPNEMGMLTNRTSYEV
PQGVKCTIDEMVRALQPRYAASETYLQN

The query sequence (length=348) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3pcs:B 355 350 0.9713 0.9521 0.9657 0.0 4fma:A, 4fma:B, 4fma:C, 4fma:D, 4fma:E, 4fma:F, 4fma:H, 4fma:I, 4fma:J, 4fma:L, 4fmd:E, 3pcs:A, 3pcs:C, 3pcs:D
2 4fmb:A 351 351 0.2155 0.2137 0.2137 0.033 4fmb:C, 4fmb:E
3 5nuo:D 200 78 0.0575 0.1000 0.2564 0.67 8i8r:D, 5nuo:B, 5nuo:F, 5nup:E, 5nur:D
4 2wtk:B 311 80 0.0575 0.0643 0.2500 1.2 3gni:B, 8vsu:B, 2wtk:E
5 5x9d:A 302 106 0.0833 0.0960 0.2736 2.6 7f4c:A, 7f4c:B
6 6z1p:AB 264 125 0.0747 0.0985 0.2080 2.6
7 6hzz:B 516 41 0.0374 0.0252 0.3171 9.0 6hzz:A, 6i01:A, 6i01:B, 6i02:A, 6i02:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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