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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MSARRTESDIQGFHATPEFGGNLQKVLVDLIELSLQGKQAHWNVVGSNFRDLHLQLDELVDFAREGSDTIAERMRALDAV
PDGRSDTVAATTTLPEFPAFERSTADVVDLITTRINATVDTIRRVHDAVDAEDPSTADLLHGLIDGLEKQAWLIRSENRK
V

The query sequence (length=161) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4m33:A 161 161 0.9938 0.9938 0.9938 1.13e-114 4m32:A, 4m32:B, 4m32:C, 4m32:D, 4m33:B, 4m33:C, 4m33:D, 4m34:A, 4m34:B, 4m34:C, 4m34:D, 4m35:A, 4m35:B, 4m35:C, 4m35:D, 5ww3:A, 5ww3:B, 5ww3:C, 5ww3:D, 5ww4:A, 5ww4:B, 5ww4:C, 5ww4:D, 5ww5:A, 5ww5:C, 5ww5:B, 5ww6:A, 5ww6:B, 5ww6:C, 5ww6:D, 5ww7:A, 5ww7:C, 5ww7:B, 5ww7:D, 5ww8:A, 5ww8:B, 5ww8:C, 5ww8:D, 5ww9:A, 5ww9:B, 5ww9:C, 5ww9:D, 2z90:A, 2z90:B, 2z90:C, 2z90:D
2 4a25:B 169 155 0.5404 0.5148 0.5613 2.18e-52 4a25:A, 4a25:C, 4a25:D
3 2c2j:A 165 134 0.2919 0.2848 0.3507 3.07e-19 2c6r:A, 6tb5:A, 6tgt:A
4 2yjj:G 157 132 0.2795 0.2866 0.3409 9.22e-14 2yjj:A, 2yjj:B, 2yjj:C, 2yjj:I, 2yjj:D, 2yjj:J, 2yjj:E, 2yjj:F, 2yjj:H, 2yjj:K, 2yjj:L, 2yjk:A, 2yjk:B, 2yjk:C, 2yjk:I, 2yjk:D, 2yjk:J, 2yjk:E, 2yjk:F, 2yjk:G, 2yjk:H, 2yjk:K, 2yjk:L
5 4dyu:H 157 134 0.2547 0.2611 0.3060 2.40e-13 4dyu:A, 4dyu:B, 4dyu:C, 4dyu:D, 4dyu:E, 4dyu:F, 4dyu:I, 4dyu:J, 4dyu:K, 4dyu:L
6 7aqs:E 159 134 0.2609 0.2642 0.3134 2.01e-12 3ak9:A, 3ak9:C, 3ak9:B, 3ak9:D, 3ak9:E, 3ak9:G, 3ak9:F, 3ak9:H, 3ak9:I, 3ak9:K, 3ak9:J, 3ak9:L, 7aqs:A, 7aqs:C, 7aqs:B, 7aqs:D, 7aqs:G, 7aqs:F, 7aqs:H, 7aqs:I, 7aqs:K, 7aqs:J, 7aqs:L, 7aqs:M, 7aqs:O, 7aqs:N, 7aqs:P, 7aqs:Q, 7aqs:S, 7aqs:R, 7aqs:T, 7aqs:U, 7aqs:W, 7aqs:V, 7aqs:X, 1f30:A, 1f30:B, 1f30:E, 1f30:F, 1f30:G, 1f30:H, 1f30:I, 1f30:J
7 1vei:A 175 138 0.2671 0.2457 0.3116 5.58e-12 1uvh:A, 1uvh:B, 1uvh:C, 1uvh:D, 1veq:A, 1veq:J, 1veq:B, 1veq:C, 1veq:D, 1veq:E, 1veq:F, 1veq:L, 1veq:G, 1veq:H, 1veq:I, 1veq:K
8 2c2f:A 178 142 0.2671 0.2416 0.3028 5.87e-11 2c2u:A, 2f7n:A
9 1n1q:A 149 139 0.2609 0.2819 0.3022 6.87e-11 1n1q:B, 1n1q:C, 1n1q:D
10 8ffd:B 156 136 0.2671 0.2756 0.3162 3.97e-10 8ffb:A, 8ffb:B, 8ffb:L, 8ffb:C, 8ffb:D, 8ffb:E, 8ffb:F, 8ffb:G, 8ffb:I, 8ffb:H, 8ffb:J, 8ffb:K, 8ffc:A, 8ffc:E, 8ffc:B, 8ffc:L, 8ffc:C, 8ffc:J, 8ffc:D, 8ffc:F, 8ffc:G, 8ffc:I, 8ffc:H, 8ffc:K, 8ffc:M, 8ffc:N, 8ffc:O, 8ffc:P, 8ffd:A, 8ffd:C, 8ffd:D, 8ffd:E, 8ffd:F, 8ffd:G, 8ffd:H, 8ffd:I, 8ffd:J, 8ffd:K, 8ffd:L, 8ffd:M, 8ffd:N, 8ffd:O, 8ffd:P
11 1ji5:A 142 117 0.2050 0.2324 0.2821 2.12e-09 1ji5:B, 1ji5:C, 1ji5:D
12 4cyb:J 173 137 0.2795 0.2601 0.3285 2.07e-08 4cyb:A, 4cyb:B, 4cyb:C, 4cyb:D, 4cyb:E, 4cyb:F, 4cyb:G, 4cyb:H, 4cyb:I, 4cyb:K, 4cyb:L
13 1jig:A 146 135 0.2174 0.2397 0.2593 2.11e-08 1jig:B, 1jig:C, 1jig:D
14 1moj:A 180 68 0.1801 0.1611 0.4265 7.70e-07 1moj:B, 1moj:C, 1moj:D, 1tjo:A, 1tjo:B, 1tjo:C, 1tjo:D, 1tk6:A, 1tk6:B, 1tk6:C, 1tk6:D, 1tko:A, 1tko:B, 1tko:C, 1tko:D, 1tkp:A, 1tkp:B, 1tkp:D, 1tkp:C
15 6hx2:B 156 144 0.2360 0.2436 0.2639 1.46e-06 6hui:D, 6hui:A, 6hui:B, 6hui:C, 6hui:E, 6hui:F, 6hx2:A, 6hx2:C, 6hx2:D, 6hx2:E, 6hx2:F, 2iy4:B, 2iy4:C, 2iy4:D, 2iy4:E, 2iy4:G, 2iy4:F, 2iy4:H, 2iy4:I, 2iy4:J, 2iy4:K, 2iy4:L, 2iy4:M, 2iy4:O, 2iy4:N, 2iy4:P, 2iy4:Q, 2iy4:S, 2iy4:R, 2iy4:T, 2iy4:U, 2iy4:X, 2iy4:V, 2iy4:Y, 1qgh:E, 1qgh:G, 1qgh:A, 1qgh:C, 1qgh:I, 1qgh:K, 1qgh:F, 1qgh:H, 1qgh:J, 1qgh:L, 1qgh:B, 1qgh:D, 6sev:A, 6sev:B, 6sev:D, 6sev:E
16 2pyb:A 151 140 0.2050 0.2185 0.2357 8.04e-06 2pyb:B, 2pyb:C, 2pyb:D
17 3ge4:A 161 76 0.1615 0.1615 0.3421 1.37e-05 3ge4:B, 3ge4:C, 3ge4:D, 3ge4:E, 3ge4:F, 3ge4:G, 3ge4:H, 3ge4:I, 3ge4:J, 3ge4:K, 3ge4:L
18 5hjh:D 178 138 0.2484 0.2247 0.2899 3.15e-04 5hjh:A, 5hjh:B, 5hjh:C, 5i4j:A, 5i4j:B, 5i4j:C, 5i4j:D
19 2fjc:B 156 69 0.1366 0.1410 0.3188 4.21e-04 2fjc:A, 2fjc:D, 2fjc:C, 2fjc:E, 2fjc:H, 2fjc:F, 2fjc:G, 2fjc:I, 2fjc:L, 2fjc:J, 2fjc:K, 2fjc:M, 2fjc:N, 2fjc:O, 2fjc:P
20 3kwo:A 149 115 0.1677 0.1812 0.2348 7.30e-04 3kwo:B, 3kwo:C, 3kwo:D
21 2wlu:A 166 122 0.1863 0.1807 0.2459 0.001
22 6lkp:C 172 75 0.1553 0.1453 0.3333 0.002 6lkp:A, 6lkp:B, 6lkp:D, 6lkp:E, 6lkp:F
23 2bw1:G 165 125 0.1925 0.1879 0.2480 0.021 2bw1:C, 2bw1:D, 2bw1:A, 2bw1:B, 2bw1:H, 2bw1:E, 2bw1:F, 2bw1:K, 2bw1:L, 2bw1:I, 2bw1:J, 1umn:K, 2ux1:A, 2ux1:B, 2ux1:C, 2ux1:D, 2ux1:E, 2ux1:F, 2ux1:G, 2ux1:H, 2ux1:I, 2ux1:J, 2ux1:K, 2ux1:L, 2v15:A, 2v15:B, 2v15:C, 2v15:D, 2v15:E, 2v15:F, 2v15:G, 2v15:H, 2v15:I, 2v15:J, 2v15:K, 2v15:L, 2xjm:A, 2xjm:B, 2xjm:C, 2xjm:D, 2xjm:E, 2xjm:F, 2xjm:G, 2xjm:H, 2xjm:I, 2xjm:J, 2xjm:K, 2xjm:L, 2xjn:A, 2xjn:C, 2xjn:D, 2xjn:E, 2xjn:F, 2xjn:G, 2xjn:H, 2xjn:I, 2xjn:J, 2xjn:K, 2xjn:L, 2xkq:A, 2xkq:B, 2xkq:C, 2xkq:D, 2xkq:E, 2xkq:F, 2xkq:G, 2xkq:H, 2xkq:I, 2xkq:J, 2xkq:K, 2xkq:L
24 1ji4:A 144 59 0.1118 0.1250 0.3051 0.029 4evb:A, 4evc:A, 1ji4:D, 1ji4:B, 1ji4:C, 1ji4:E, 1ji4:H, 1ji4:F, 1ji4:G, 1ji4:I, 1ji4:L, 1ji4:J, 1ji4:K
25 2vxx:B 173 76 0.1180 0.1098 0.2500 0.033 2vxx:A, 2vxx:D, 2vxx:C
26 5lbh:A 143 122 0.1615 0.1818 0.2131 0.34 5lbh:J, 5lbh:B, 5lbh:C, 5lbh:D, 5lbh:G, 5lbh:E, 5lbh:F, 5lbh:L, 5lbh:H, 5lbh:I, 5lbh:K
27 4irr:A 290 50 0.0870 0.0483 0.2800 1.1 4irr:B, 4isw:A, 4isw:B, 5noo:A, 5noo:B, 5noo:C, 5noo:D, 4psg:A, 4psg:B
28 6cfw:J 143 40 0.0932 0.1049 0.3750 1.7
29 1yle:A 330 29 0.0807 0.0394 0.4483 2.7
30 3hd7:A 91 57 0.1242 0.2198 0.3509 3.3 5w5c:A
31 3qur:A 249 69 0.1366 0.0884 0.3188 3.3 3qun:A
32 6l8n:A 810 105 0.1366 0.0272 0.2095 5.3
33 3qvf:A 274 66 0.1242 0.0730 0.3030 5.8 3d40:A, 3d41:A, 3quo:A, 3qvh:A
34 4wio:A 525 34 0.0745 0.0229 0.3529 6.1 3uow:A
35 6v85:A 1901 41 0.0870 0.0074 0.3415 6.8 6v86:A
36 3uow:B 477 34 0.0745 0.0252 0.3529 7.0
37 3r2l:A 154 50 0.0807 0.0844 0.2600 8.7 3r2m:A, 3r2r:A, 3r2s:A
38 4j4v:D 246 26 0.0683 0.0447 0.4231 8.8 4j4v:A, 4j4v:B, 4j4v:C, 4j4v:E
39 2xrg:A 758 26 0.0559 0.0119 0.3462 9.5
40 4zg9:B 764 26 0.0559 0.0118 0.3462 9.5 5kxa:A, 5m7m:A, 4zg6:A, 4zg6:B, 4zg9:A, 4zga:A
41 3way:A 787 26 0.0559 0.0114 0.3462 9.5 8c3o:B, 8c3p:A, 8c3p:B, 8c4w:A, 8c7r:A, 5dlv:A, 5dlv:B, 5dlw:A, 5inh:A, 5l0b:A, 5l0b:B, 5l0e:A, 5l0e:B, 5l0k:A, 5l0k:B, 6leh:A, 5lqq:A, 5m0d:A, 5m0e:A, 5m0m:A, 5m0s:A, 7mfh:A, 5mhp:A, 3nkn:A, 3nko:A, 3nkq:A, 3nkr:A, 5ohi:A, 5olb:A, 7p0k:AAA, 7p4j:A, 7p4o:A, 3waw:A, 6y5m:A, 4zg7:A
42 5s9m:A 809 26 0.0559 0.0111 0.3462 9.6 8c3o:A, 5dlt:A, 9ent:A, 9eu5:A, 5hrt:A, 5ijq:A, 5ijs:A, 5lia:A, 3nkm:A, 3nkp:A, 5s9l:A, 5s9n:A, 6w35:A, 3wav:A, 3wax:A, 2xr9:A, 7z0n:AAA, 7z3k:AAA, 7z3l:AAA

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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