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BioLiP
>protein
MSAMVQIRNVPDELLHELKARAAAQRMSLSDFLLARLAEIAEEP

The query sequence (length=44) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7e4j:B 44 44 1.0000 1.0000 1.0000 2.52e-25
2 6sga:F3 888 29 0.2727 0.0135 0.4138 1.3 7pub:F3, 6sgb:F3
3 7pua:F3 911 29 0.2727 0.0132 0.4138 1.4
4 8tj5:0 1246 21 0.1818 0.0064 0.3810 5.5 8tj5:Y

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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