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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MRVWVGIDDTDSSRGMCTTYLAVLAMERVERELGKVIGFPRLIRLNPTIPYKTRGNGAVSFLVEVDDVGELVDVVNEVII
EHAMLDDEKTNPGAVFVDEELAVKLKPFADKAIKDVLQIDEALFVIGKYFIPHLRHKKGRGLIGALAAVGAELEDFTLEL
IAYRYPERFGTEREYDEESFFDMDYELYPQTFDNVDWCNDVVVCIPNTPCPVLYGIRGESVEALYKAMESVKTEPVDRRM
IFVTNHATDMHLIGEEEVHRLENYRSYRLRGRVTLEPYDIEGGHVFFEIDTKFGSVKCAAFEPTKQFRNVIRLLRKGDVV
EVYGSMKKDTINLEKIQIVELAEIWVEKNPICPSCGRRMESAGRGQGFRCKKCRTKADEKLREKVERELQPGFYEVPPSA
RRHLSKPLIRMNVEGRHIFR

The query sequence (length=420) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6agg:Z 420 420 1.0000 1.0000 1.0000 0.0 3amt:A, 3amu:A, 3au7:A, 4rvz:Z, 5xob:Z
2 4eb4:B 301 122 0.0714 0.0997 0.2459 0.018 4e5o:A, 4e5o:B, 4e5o:C, 4e5o:D, 4e5o:E, 4e5o:F, 4eb4:A, 4eb4:C, 4eb4:D, 4ein:A, 4ein:B, 3ejl:C, 3ejl:D, 4ez8:A, 6f6z:A, 6f6z:B, 5fct:A, 5fct:B, 4fgt:A, 4g2o:X, 4g6w:X, 4gd7:A, 6gko:A, 6gko:B, 6gyj:A, 3h9k:A, 3h9k:B, 3h9k:D, 3h9k:E, 3hb8:A, 3hb8:B, 3hb8:C, 3hb8:D, 3hb8:E, 5hs3:A, 5hs3:B, 5hs3:C, 5hs3:D, 5hs3:E, 5hs3:F, 1hvy:A, 1hvy:B, 1hvy:C, 1hvy:D, 1i00:A, 1i00:B, 1ju6:A, 1ju6:B, 1ju6:C, 1ju6:D, 1juj:A, 1juj:B, 1juj:C, 1juj:D, 3ob7:A, 3ob7:B, 3ob7:D, 3ob7:E, 6oju:B, 6oju:A, 6oju:C, 6oju:D, 6ojv:B, 6ojv:A, 6ojv:D, 6ojv:C, 6pf3:A, 6pf3:B, 6pf3:C, 6pf3:D, 6pf4:B, 6pf4:D, 6pf4:A, 6pf4:C, 6pf5:A, 6pf5:B, 6pf5:C, 6pf5:D, 6pf6:B, 6pf6:A, 6pf6:C, 6pf6:D, 6qxg:A, 6qxg:B, 6qxg:C, 6qxh:A, 6qxh:B, 6qxh:C, 6qyq:B, 6qyq:D, 6r2e:A, 6r2e:C, 6r2e:D, 6r2e:B, 6r2e:F, 6r2e:H, 6r2e:E, 6r2e:G, 2rd8:B, 2rda:C, 2rda:D, 2rda:E, 1rts:A, 1rts:B, 2tsr:A, 2tsr:B, 2tsr:C, 2tsr:D, 4up1:A, 4up1:B, 4up1:D, 4up1:C, 5wrn:B, 5wrn:A, 5wrn:C, 5wrn:D, 5wrn:E, 5wrn:F, 5x5d:A, 5x5d:D, 5x5d:B, 5x5d:E, 5x5d:C, 5x5d:F, 5x5q:A, 5x5q:D, 5x5q:B, 5x5q:E, 5x5q:C, 5x5q:F, 5x66:A, 5x66:D, 5x66:B, 5x66:E, 5x66:C, 5x66:F, 5x67:A, 5x67:B, 5x69:A, 5x69:D, 5x69:B, 5x69:E, 5x69:C, 5x69:F, 6y08:A, 6y08:B, 6zxo:A, 6zxo:B, 6zxo:C, 6zxo:D, 6zxo:E, 6zxo:F
3 2onb:A 264 122 0.0643 0.1023 0.2213 0.18 4e28:A, 3n5e:A, 3n5e:B
4 7xyk:A 290 65 0.0381 0.0552 0.2462 0.24 7cca:A, 7cca:B, 7xyj:A, 7xyj:B, 7xyj:C, 7xyj:D, 7xyk:B, 7xyk:C, 7xyk:D
5 3j9w:AC 210 71 0.0476 0.0952 0.2817 0.25 8buu:c, 8cdu:E, 8cec:H, 8ced:E, 8cee:E, 6ha1:c, 6ha8:c, 6htq:c, 5njt:C, 7o5b:C, 8qcq:c, 7qgu:h, 7qh4:g, 8qpp:C, 7qv1:c, 7qv2:c, 7qv3:c, 8r55:C
6 2aaz:A 305 66 0.0405 0.0557 0.2576 0.36 2aaz:B, 2aaz:C, 2aaz:D, 2aaz:E, 2aaz:F, 2aaz:G, 2aaz:H, 2aaz:I, 2aaz:J, 2aaz:K, 2aaz:L, 2aaz:M, 2aaz:N, 2aaz:O, 2aaz:P
7 3c0a:A 289 62 0.0405 0.0588 0.2742 0.40
8 1p5r:A 427 73 0.0571 0.0562 0.3288 0.65 1p5r:B, 1t3z:A, 1t3z:B, 1t4c:A, 1t4c:B, 1vgq:A, 1vgq:B, 1vgr:A, 1vgr:B, 2vjk:A, 2vjk:B, 2vjl:A, 2vjl:B, 2vjm:A, 2vjm:B, 2vjo:A, 2vjo:B
9 5jb3:Y 50 28 0.0262 0.2200 0.3929 0.99 5jbh:Y, 6sw9:Y, 6swc:Y, 6swe:Y, 4v4n:BY, 4v6u:AY, 7zag:Y, 7zah:Y, 7zai:Y, 7zhg:Y
10 1bo7:A 316 62 0.0381 0.0506 0.2581 2.4 3bnz:A, 1bo8:A, 1bp0:A, 1bp6:A, 1bpj:A, 3byx:A, 3bz0:A, 3c06:A, 2g86:A, 2g89:A, 2g8a:A, 2g8d:A, 3ijz:A, 3ik0:A, 3ik1:A, 1jmf:A, 1jmg:A, 1jmh:A, 1jmi:A, 1lca:A, 1lcb:A, 1lce:A, 1nja:A, 1njb:A, 1njc:A, 1njd:A, 1nje:A, 1tdb:A, 1tdc:A, 2tdd:A, 2tdm:A, 1thy:A, 1tsl:A, 1tsm:A, 1tsv:A, 1tsx:A, 1tsy:A, 1tsz:A, 1tvu:A, 1tvv:A, 1tvw:A, 1vza:A, 1vzb:A, 1vzc:A, 1vzd:A, 1vze:A
11 4b2g:B 572 40 0.0357 0.0262 0.3750 2.6 4b2g:A
12 6uz7:f 44 24 0.0238 0.2273 0.4167 2.7
13 5myj:AC 211 71 0.0405 0.0806 0.2394 2.7
14 3irm:A 520 47 0.0310 0.0250 0.2766 2.9 3cl9:A, 3clb:A, 3clb:B, 3clb:C, 3clb:D, 2h2q:A, 2h2q:B, 3hbb:A, 3hbb:B, 3hbb:C, 3hbb:D, 3inv:A, 3inv:B, 3irm:B, 3irm:C, 3irm:D, 3irn:A, 3irn:B, 3irn:C, 3irn:D, 3iro:A, 3iro:B, 3iro:C, 3iro:D, 3kjs:A, 3kjs:B, 3kjs:C, 3kjs:D, 5t7o:A, 5t7o:B, 5t7o:C, 5t7o:D
15 5xya:A 1358 79 0.0571 0.0177 0.3038 3.4 5xxz:A
16 7edd:A 1394 79 0.0571 0.0172 0.3038 3.4 5xyr:A
17 5xxz:B 1310 79 0.0571 0.0183 0.3038 3.5
18 6vjb:A 1346 79 0.0571 0.0178 0.3038 3.5
19 4xsc:B 284 64 0.0381 0.0563 0.2500 4.7 4xsc:A, 4xsc:C, 4xsc:D, 4xsd:A, 4xsd:B, 4xsd:C, 4xsd:D
20 4ijr:A 328 71 0.0548 0.0701 0.3239 5.1 4ijr:C
21 4xjn:A 395 64 0.0524 0.0557 0.3438 7.1 5wkn:A, 5wkn:B, 4xjn:B, 4xjn:C, 4xjn:D, 4xjn:E, 4xjn:F, 4xjn:G, 4xjn:H, 4xjn:I, 4xjn:J, 4xjn:K, 4xjn:L, 4xjn:M
22 5ijl:A 943 55 0.0381 0.0170 0.2909 7.4
23 1f28:A 295 42 0.0262 0.0373 0.2619 7.5 1ci7:A, 1ci7:B, 1f28:B, 1f28:C, 1f28:D
24 2db6:A 74 44 0.0333 0.1892 0.3182 8.1
25 6fyx:f 74 24 0.0238 0.1351 0.4167 8.5 6fyy:f, 6gsm:f, 6gsn:f, 8i7j:f, 5it7:f, 5it9:f, 3j80:f, 3j81:f, 3jam:f, 3jap:f, 8rw1:f, 8s8d:f, 8s8e:f, 8s8f:f, 8s8g:f, 8s8h:f, 8s8i:f, 8s8j:f
26 1chc:A 68 17 0.0190 0.1176 0.4706 9.4
27 8bh7:c 208 89 0.0476 0.0962 0.2247 9.5 7aso:B, 7asp:k, 7bge:c, 8bh6:c, 8byv:c, 6fxc:Ac, 6fxc:Bc, 7kwg:c, 5li0:c, 5nd8:c, 5nd9:c, 5ngm:Ac, 7nhl:d, 7nhm:d, 8p2f:d, 8p2g:d, 8p2h:d, 7p48:c, 6s0x:c, 6s13:c, 5tcu:SB, 8y38:c, 8y39:c, 6yef:c
28 4v8m:Bp 81 30 0.0238 0.1235 0.3333 9.5 8ova:Bp, 8ove:Bp, 5t5h:p
29 7nhk:d 206 71 0.0429 0.0874 0.2535 9.9 6o8w:c, 6o8x:c, 6o8y:c, 6o8z:c, 6o90:c, 7p7q:d, 7p7r:d, 7p7s:d, 7p7t:d, 7p7u:d, 6w6p:c, 6wua:c

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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