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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPNNPQEADWSQQTFDYLLSHVH
SPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPRELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFF
QRKVESFEEVAREGADVIVNCTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGG
IFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGPSNTEVIHNYGHGGYGLTIHW
GCALEAAKLFGRILEEKKLS

The query sequence (length=340) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2du8:A 340 340 1.0000 1.0000 1.0000 0.0 3cuk:A, 3cuk:B, 3cuk:C, 3cuk:D, 2du8:B, 2du8:G, 2du8:J, 2e48:A, 2e48:B, 2e48:C, 2e48:D, 2e49:A, 2e49:B, 2e49:C, 2e49:D, 2e4a:A, 2e4a:B, 2e4a:C, 2e4a:D, 2e82:A, 2e82:B, 2e82:C, 2e82:D, 3g3e:A, 3g3e:B, 3g3e:C, 3g3e:D, 8hy5:A, 8hy5:B, 6kbp:A, 6kbp:B, 6kbp:C, 6kbp:D, 4qfc:A, 4qfc:B, 4qfd:A, 4qfd:B, 7u9s:A, 7u9s:B, 7u9u:A, 7u9u:B, 3w4i:A, 3w4i:B, 3w4i:C, 3w4i:D, 3w4j:A, 3w4j:B, 3w4j:C, 3w4j:D, 3w4k:A, 3w4k:B, 3w4k:C, 3w4k:D, 5zj9:A, 5zj9:B, 5zj9:C, 5zj9:D, 5zja:A, 5zja:B, 5zja:C, 5zja:D, 3znn:A, 3znn:B, 3zno:A, 3zno:B, 3znp:A, 3znp:B, 3znq:A, 3znq:B
2 4yjd:A 342 339 0.8412 0.8363 0.8437 0.0 1an9:A, 1an9:B, 1dao:A, 1dao:B, 1dao:C, 1dao:D, 1dao:E, 1dao:F, 1dao:G, 1dao:H, 1ddo:A, 1ddo:B, 1ddo:C, 1ddo:D, 1ddo:E, 1ddo:F, 1ddo:G, 1ddo:H, 1evi:A, 1evi:B, 1kif:A, 1kif:B, 1kif:C, 1kif:D, 1kif:E, 1kif:F, 1kif:G, 1kif:H, 1ve9:A, 1ve9:B, 3wgt:A, 3wgt:B, 5wwv:A, 5wwv:B, 5wwv:C, 5wwv:D, 5wwv:E, 5wwv:F, 5wwv:G, 5wwv:H, 5wx2:A, 5wx2:B, 5wx2:C, 5wx2:D, 5wx2:E, 5wx2:F, 5wx2:G, 5wx2:H, 4yjd:B, 4yjf:A, 4yjf:B, 4yjg:A, 4yjg:B, 4yjh:A, 4yjh:B
3 6rkf:A 335 337 0.3941 0.4000 0.3976 2.97e-79 6rkf:B, 6rkf:C, 6rkf:D, 6rkf:E, 6rkf:F
4 1c0i:A 363 357 0.2912 0.2727 0.2773 8.02e-29 1c0k:A, 1c0l:A, 1c0p:A
5 7ct4:C 347 357 0.2971 0.2911 0.2829 1.26e-22 7ct4:A, 7ct4:B, 7ct4:D
6 3if9:A 364 152 0.0971 0.0907 0.2171 0.029 3if9:B, 3if9:C, 3if9:D, 1ng3:A, 1ng3:B, 1ng4:A, 1ng4:B, 1ryi:A, 1ryi:B, 1ryi:C, 1ryi:D
7 5ewu:A 383 58 0.0529 0.0470 0.3103 0.094 5ewu:B
8 6pxs:A 370 67 0.0618 0.0568 0.3134 0.65 6pxs:B, 6pxs:C, 6pxs:D
9 8p84:B 450 50 0.0588 0.0444 0.4000 1.3 8p84:A
10 5i39:A 383 25 0.0382 0.0339 0.5200 3.4
11 5hxw:A 433 25 0.0382 0.0300 0.5200 3.4 5hxw:B, 5hxw:C, 5hxw:D, 5hxw:E, 5hxw:F
12 3mqg:C 192 49 0.0441 0.0781 0.3061 4.2 3mqg:A, 3mqg:B, 3mqg:D, 3mqg:E, 3mqg:F, 3mqh:A, 3mqh:C, 3mqh:B, 3mqh:D, 3mqh:F, 3mqh:E
13 6pvg:A 445 26 0.0294 0.0225 0.3846 6.1 6pvf:A, 6pvh:A, 6pvi:A, 6pvj:A
14 7dco:P 246 50 0.0412 0.0569 0.2800 7.5 6exn:K, 5gm6:P, 5gmk:P, 6j6g:P, 6j6h:P, 6j6n:P, 6j6q:P, 5lj3:K, 5lj5:K, 5lqw:M, 5wsg:P, 5y88:Q, 5ylz:Q
15 8aq8:AAA 344 25 0.0382 0.0378 0.5200 7.7 8aq8:BBB, 8aq8:CCC, 8aq8:DDD

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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