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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRVQVSGLSDETTWHTLKDHLRQAGEVTFCKVFSGGRAVVEFVTPEDAARAITELQASELEGATLFLR

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8fnk:13 127 68 0.9853 0.5276 0.9853 5.57e-44 6e4p:C, 6e4p:I, 6e4p:B
2 2m8d:B 91 70 0.4412 0.3297 0.4286 1.61e-14 7abg:A6
3 2n7c:A 89 68 0.3088 0.2360 0.3088 0.003
4 6r5k:H 394 69 0.3235 0.0558 0.3188 0.022 6r5k:D, 6r5k:F
5 6r5k:H 394 32 0.1765 0.0305 0.3750 3.0 6r5k:D, 6r5k:F
6 5mqf:o 223 30 0.2353 0.0717 0.5333 0.071 6id1:y, 7w59:y, 7w5a:y, 7w5b:y
7 5x8p:v 190 71 0.3235 0.1158 0.3099 0.15 5mmj:v, 5mmm:v, 5x8r:v
8 7zew:A 117 30 0.2353 0.1368 0.5333 0.18 7zex:A
9 4ed5:B 169 68 0.3088 0.1243 0.3088 0.18 4ed5:A
10 9em0:A 376 36 0.1912 0.0346 0.3611 0.26 8aua:A, 8aua:B, 8aub:A, 8aub:B, 8aue:A, 8aue:B, 8auj:A, 8auj:B, 8aul:A, 8aul:B, 8aum:A, 8aum:B, 8aun:A, 8aun:B, 8auo:B, 8auo:A, 8auq:A, 8auq:B, 9em0:B, 9em2:B, 9em2:A, 9em3:A, 9em4:B, 9em4:A, 9em5:A, 9em6:B, 9em6:A, 3hgo:A, 3hgo:B, 3hgs:A, 3hgs:B, 2hs6:A, 2hs6:B, 2hs8:A, 2hs8:B, 2hsa:B, 2hsa:A, 8qmx:A, 8qmx:B, 8qn1:A, 8qn1:B, 8qn1:C, 8qn1:D, 8qn3:A, 8qn3:B, 8qn9:B, 8s8v:A, 8s8v:B, 8s8y:B, 8s8y:A
11 4a8x:A 88 30 0.1471 0.1136 0.3333 0.26
12 5dy2:A 378 36 0.1765 0.0317 0.3333 1.1 5dxx:A, 5dxy:A, 5dy3:A
13 2i2y:A 150 27 0.2059 0.0933 0.5185 1.2 9asq:H, 5bmg:A, 5bmg:B, 5bmg:H, 5bmg:D, 5bmg:E, 5bmg:F, 5bmg:G, 5bmh:A, 3v3x:C, 3v3x:D
14 4qqb:A 169 60 0.2500 0.1006 0.2833 1.3 1b7f:A, 1b7f:B, 4qqb:B
15 2mgz:A 94 37 0.1912 0.1383 0.3514 1.5
16 9gpj:A 184 29 0.1912 0.0707 0.4483 1.6 6dcl:A, 6dcl:B, 9f4d:A, 9f4e:A, 9f4f:A, 9f4g:A, 9f4h:A, 9f4j:A, 9f4k:A, 9f4l:A, 9f4m:A, 9f4n:A, 9f4o:A, 9f4p:A, 9f4q:A, 9f4r:A, 9f4s:A, 9f4t:A, 9f4u:A, 9f4v:A, 9f4w:A, 9f4x:A, 9f4y:A, 9f4z:A, 9f50:A, 9f51:A, 9f52:A, 9f53:A, 9f54:A, 9f55:A, 9f5c:A, 9f5d:A, 9f5e:A, 9f5f:A, 9f5g:A, 9f5k:A, 9f7f:A, 9f7h:A, 5mpg:A, 5mpl:A, 1pgz:A, 1po6:A, 8rzv:A, 1u1k:A, 1u1l:A, 1u1m:A, 1u1n:A, 1u1o:A, 1u1p:A, 1u1q:A, 1u1r:A, 2up1:A, 4yoe:A
17 5en1:A 184 28 0.1765 0.0652 0.4286 1.6 8hni:A, 8hni:B, 8hni:G, 8hni:I, 8hni:H, 8hni:E, 8hni:K, 8hni:C, 8hni:D, 8hni:J, 8hni:F, 8hni:L, 5ho4:A, 7wm3:A, 7wm3:B, 7wm3:C, 7wm3:D, 5wwe:A, 5wwf:A, 5wwf:C, 5wwg:A
18 4c2c:A 433 25 0.1618 0.0254 0.4400 1.9 4c2d:A, 4c2d:B, 4c2d:C, 4c2f:A, 4c2g:A
19 5h68:B 332 36 0.2059 0.0422 0.3889 1.9 5h68:A
20 4c2d:D 343 25 0.1618 0.0321 0.4400 2.0
21 8xxm:3G 84 59 0.2647 0.2143 0.3051 2.7 5k0y:O, 8pj1:o, 8pj2:o, 8pj3:o, 8pj4:o, 8pj5:o, 8pj6:o
22 7abi:P 237 48 0.2353 0.0675 0.3333 3.2 7aav:P, 7abg:P
23 7qun:A 694 35 0.2059 0.0202 0.4000 3.2 7qun:B, 7qun:C, 7qun:D
24 8ch6:U 295 48 0.2353 0.0542 0.3333 3.3 7a5p:P, 8c6j:M, 6ff4:P, 6ff7:P, 9fmd:O, 8i0p:O, 8i0r:O, 8i0s:O, 8i0t:O, 8i0u:O, 8i0v:O, 8i0w:O, 6icz:O, 6id0:O, 6id1:O, 5mqf:P, 6qdv:M, 7qtt:U, 8ro2:O, 7w59:O, 7w5a:O, 7w5b:O, 5xjc:O, 5yzg:O, 5z56:O, 5z57:O, 6zym:P
25 8i0v:4 161 70 0.2941 0.1242 0.2857 3.6
26 2rs2:A 84 28 0.1765 0.1429 0.4286 3.7
27 5hh3:C 393 31 0.1618 0.0280 0.3548 6.7 5hh3:A
28 4ayb:B 1103 22 0.1471 0.0091 0.4545 7.3 3hkz:B, 3hkz:J, 2pmz:B, 2pmz:R, 4v8s:AR, 4v8s:BB, 2waq:B, 2wb1:B, 2wb1:R, 2y0s:B, 2y0s:R
29 7ok0:B 1109 22 0.1471 0.0090 0.4545 7.3 7oq4:B, 7oqy:B
30 1dfx:A 125 34 0.1324 0.0720 0.2647 9.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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