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BioLiP
>protein
MRVLVSNDDGVDAPGIKILADALRNAGHEVMVVAPDRDRSGASNSLTLDTPIRAKQIDMHTYSVAGTPTDCVHLALTGLL
NYDPDIVVSGINNTGNLGDDVIYSGTVSAAMEGRFLGLPAVAVSLVTLYQAPQYETAAHAAINIVAQLKTDPLPADTILN
VNVPDVTWQQMRGFKVTRLGNRHRSAPCLTQTDPRGHTIYWIGPAGPEQDAGPGTDFDAVRNTYISITPIHVDLTRYQAL
ENVTRWTDRLTAHMD

The query sequence (length=255) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ksr:D 259 259 1.0000 0.9846 0.9846 0.0 5ksq:A, 5ksq:B, 5ksr:A, 5ksr:B, 5ksr:C, 5kss:A, 5kss:B, 5kst:A, 5kst:B, 5kst:C, 5kst:D
2 4xer:A 264 251 0.5490 0.5303 0.5578 4.67e-85 4g9o:A, 4g9o:B, 4gad:A, 4gad:B, 4ryt:A, 4ryu:A, 4ryu:B, 4ryu:C, 4ryu:D, 2v4n:A, 2v4o:A, 2v4o:B, 2v4o:C, 2v4o:D, 4xep:A, 4xer:B, 4xer:C, 4xer:D, 4xgb:A, 4xgb:B, 4xgb:C, 4xgb:D, 4xgp:A, 4xgp:B, 4xgp:C, 4xgp:D, 4xj7:A, 4xj7:B, 4xj7:C, 4xj7:D
3 2wqk:A 248 248 0.4196 0.4315 0.4315 4.48e-67 2wqk:B
4 1j9j:A 247 247 0.3725 0.3846 0.3846 2.33e-53 1j9j:B, 1j9k:A, 1j9k:B, 1j9l:A, 1j9l:B
5 4zg5:D 252 242 0.3569 0.3611 0.3760 1.57e-52 4zg5:A, 4zg5:C, 4zg5:G
6 2e6c:A 243 243 0.3529 0.3704 0.3704 1.45e-36 2e6b:A, 2e6b:B, 2e6b:C, 2e6b:D, 2e6c:B, 2e6c:C, 2e6c:D, 2e6h:A, 2e6h:B, 2e6h:C, 2e6h:D
7 7n15:A 520 44 0.0510 0.0250 0.2955 2.0 5h3o:A, 5h3o:B, 5h3o:C, 5h3o:D, 7n15:B, 7n15:C, 7n15:D, 7n16:D, 7n16:A, 7n16:B, 7n16:C, 7n17:A, 7n17:B, 7n17:C, 7n17:D, 6wej:A, 6wej:B, 6wej:C, 6wej:D, 6wek:A, 6wek:B, 6wek:C, 6wek:D, 6wel:A, 6wel:B, 6wel:C, 6wel:D
8 6o7b:B 254 45 0.0627 0.0630 0.3556 2.0 6o78:B
9 1jie:A 122 65 0.0745 0.1557 0.2923 2.5 1jie:B, 1jif:A, 1jif:B
10 8i4y:A 1687 200 0.2039 0.0308 0.2600 3.9 8i4y:B, 8i4z:A
11 2gej:A 361 40 0.0667 0.0471 0.4250 4.1 2gek:A, 4n9w:A
12 5xr4:B 171 23 0.0392 0.0585 0.4348 9.0 5xr4:A, 5xr6:A, 5xr6:B, 5xr7:A, 5xr7:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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