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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRVLGIETSCDETAVAVLDDGKNVVVNFTVSRHHLKNLPILLKKAFEKVPPETVDVVAATYGPGLIGALLVGLSAAKGLA
ISLEKPFVGVNHVEAHVQAVFLANPDLKPPLVVLMVSGGHTQLMKVDEDYSMEVLGETLDDSAGEAFDKVARLLGLGYPG
GPVIDRVAKKGDPEKYSFPRPMLDDDSYNFSFAGLKTSVLYFLQREKGYKVEDVAASFQKAVVDILVEKTFRLARNLGIR
KIAFVGGVAANSMLREEVRKRAERWNYEVFFPPTDNALMVAKAGYEKAKRGMFSPLSLNADPNLNV

The query sequence (length=306) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6n9a:D 330 327 1.0000 0.9273 0.9358 0.0 6nak:B, 6nak:G, 6s84:A, 6s84:D
2 8iey:A 329 329 0.4739 0.4407 0.4407 1.73e-87 8ifx:A
3 6z81:A 342 329 0.4248 0.3801 0.3951 6.24e-71 4wq4:A, 4wq4:B, 4wq5:A, 4wq5:B, 4ydu:A, 4ydu:B, 6z81:B, 3zet:B, 3zeu:B, 3zeu:E
4 2ivn:A 325 312 0.3856 0.3631 0.3782 8.18e-45 2ivo:A, 2ivo:B, 2ivo:C, 2ivp:A
5 3en9:A 519 315 0.3366 0.1985 0.3270 5.64e-42 3en9:B, 3enh:A, 3enh:B, 5jmv:A, 5jmv:B, 5jmv:C, 2vwb:A, 2vwb:B
6 8ide:A 929 308 0.3366 0.1109 0.3344 2.10e-35
7 3eno:A 329 312 0.3072 0.2857 0.3013 4.08e-33 3eno:B
8 3wuh:B 350 323 0.3203 0.2800 0.3034 8.99e-32 3wuh:A
9 6nbj:A 378 344 0.3235 0.2619 0.2878 1.56e-30 4k25:A, 6nbj:B
10 6gwj:K 334 322 0.3203 0.2934 0.3043 1.76e-28
11 8k20:A 337 282 0.2745 0.2493 0.2979 2.44e-25
12 4ydu:C 230 107 0.0980 0.1304 0.2804 4.29e-07 4ydu:D, 6z81:C, 6z81:D
13 4g9i:A 766 152 0.1307 0.0522 0.2632 0.010 4g9i:B, 4g9i:C, 4g9i:D, 4g9i:E, 4g9i:F
14 8hku:AL4P 251 69 0.0686 0.0837 0.3043 0.37 8hkv:AL4P, 8hky:AL4P, 8hkz:AL4P, 8hl1:AL4P, 8hl2:AL4P, 8hl3:AL4P, 8hl4:AL4P, 8hl5:AL4P
15 6fvt:I 385 59 0.0621 0.0494 0.3220 1.1 6ef0:I, 6ef1:I, 6ef2:I, 6ef3:I, 6fvu:I, 6fvv:I, 6fvw:I, 6fvx:I, 6fvy:I, 5mp9:I, 5mpa:I, 5mpb:I, 5mpc:I, 7qo4:I, 7qo5:I, 7qo6:I
16 2dcn:A 308 166 0.1438 0.1429 0.2651 1.6 2dcn:B, 2dcn:C, 2dcn:D, 2dcn:E, 2dcn:F, 2dcn:G, 2dcn:H, 2dcn:I, 2dcn:J, 2dcn:K, 2dcn:L
17 6g18:y 325 114 0.1046 0.0985 0.2807 4.8 6g4s:y, 6g51:y, 6g53:y, 6g5i:y, 7wtw:y, 7wtx:y, 7wtz:y, 7wu0:y, 6zuo:y, 6zxd:y, 6zxe:y
18 2h3a:A 72 24 0.0327 0.1389 0.4167 6.1 2h3a:B, 2h3c:A, 2h3c:B
19 3bfk:B 179 54 0.0490 0.0838 0.2778 6.4 3bfk:A, 3bfk:C, 3bfk:D, 3bfk:E
20 8hfr:pT 580 64 0.0654 0.0345 0.3125 6.4 5apn:x, 5apo:x, 7z34:4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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