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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRVLGIETSCDETAVAVLDDGKNVVVNFTVSQIEVHQKFGGVVPEVAARHHLKNLPILLKKAFEKVPPETVDVVAATYGP
GLIGALLVGLSAAKGLAISLEKPFVGVNHVEAHVQAVFLANPDLKPPLVVLMVSGGHTQLMKVDEDYSMEVLGETLDDSA
GEAFDKVARLLGLGYPGGPVIDRVAKKGDPEKYSFPRPMLDDDSYNFSFAGLKTSVLYFLQREKGYKVEDVAASFQKAVV
DILVEKTFRLARNLGIRKIAFVGGVAANSMLREEVRKRAERWNYEVFFPPLELCTDNALMVAKAGYEKAKRGMFSPLSLN
ADPNLNV

The query sequence (length=327) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6n9a:D 330 327 1.0000 0.9909 1.0000 0.0 6nak:B, 6nak:G, 6s84:A, 6s84:D
2 8iey:A 329 329 0.4801 0.4772 0.4772 2.75e-102 8ifx:A
3 6z81:A 342 329 0.4312 0.4123 0.4286 1.08e-87 4wq4:A, 4wq4:B, 4wq5:A, 4wq5:B, 4ydu:A, 4ydu:B, 6z81:B, 3zet:B, 3zeu:B, 3zeu:E
4 2ivn:A 325 319 0.3823 0.3846 0.3918 4.60e-53 2ivo:A, 2ivo:B, 2ivo:C, 2ivp:A
5 3en9:A 519 319 0.3364 0.2119 0.3448 8.14e-49 3en9:B, 3enh:A, 3enh:B, 5jmv:A, 5jmv:B, 5jmv:C, 2vwb:A, 2vwb:B
6 3eno:A 329 316 0.3089 0.3070 0.3196 4.04e-40 3eno:B
7 6nbj:A 378 346 0.3272 0.2831 0.3092 6.68e-40 4k25:A, 6nbj:B
8 8ide:A 929 320 0.3242 0.1141 0.3312 3.46e-38
9 3wuh:B 350 335 0.3089 0.2886 0.3015 6.21e-35 3wuh:A
10 6gwj:K 334 324 0.3150 0.3084 0.3179 1.64e-33
11 8k20:A 337 288 0.2691 0.2611 0.3056 1.10e-29
12 4ydu:C 230 123 0.0948 0.1348 0.2520 7.13e-06 4ydu:D, 6z81:C, 6z81:D
13 4g9i:A 766 128 0.1009 0.0431 0.2578 0.052 4g9i:B, 4g9i:C, 4g9i:D, 4g9i:E, 4g9i:F
14 3vth:A 753 81 0.0550 0.0239 0.2222 0.89 3vth:B, 3vti:A, 3vti:B
15 6g18:y 325 125 0.1101 0.1108 0.2880 1.1 6g4s:y, 6g51:y, 6g53:y, 6g5i:y, 7wtw:y, 7wtx:y, 7wtz:y, 7wu0:y, 6zuo:y, 6zxd:y, 6zxe:y
16 6fvt:I 385 59 0.0581 0.0494 0.3220 1.2 6ef0:I, 6ef1:I, 6ef2:I, 6ef3:I, 6fvu:I, 6fvv:I, 6fvw:I, 6fvx:I, 6fvy:I, 5mp9:I, 5mpa:I, 5mpb:I, 5mpc:I, 7qo4:I, 7qo5:I, 7qo6:I
17 6rm8:A 655 45 0.0520 0.0260 0.3778 3.4 6fa5:A, 6faa:A, 6fac:A, 6rm9:A, 6rma:A, 6rmb:A, 6rmc:A, 6rmc:B, 6zm2:A
18 2dcn:A 308 70 0.0642 0.0682 0.3000 3.9 2dcn:B, 2dcn:C, 2dcn:D, 2dcn:E, 2dcn:F, 2dcn:G, 2dcn:H, 2dcn:I, 2dcn:J, 2dcn:K, 2dcn:L
19 5tpg:A 271 39 0.0489 0.0590 0.4103 4.1
20 3e2t:A 307 39 0.0428 0.0456 0.3590 4.3 8cji:A, 8cjj:A, 8cjk:A, 8cjl:A, 8cjm:A, 8cjn:A, 8cjo:A, 3hf6:A, 3hf8:A, 3hfb:A, 5j6d:A, 5l01:A, 1mlw:A, 7zif:A, 7zig:A, 7zih:A, 7zii:A, 7zij:A, 7zik:A, 7zik:B
21 5j6d:B 248 26 0.0367 0.0484 0.4615 6.2
22 2h3a:A 72 24 0.0306 0.1389 0.4167 6.6 2h3a:B, 2h3c:A, 2h3c:B
23 8hfr:pT 580 64 0.0612 0.0345 0.3125 6.7 5apn:x, 5apo:x, 7z34:4
24 7fgi:A 437 83 0.0642 0.0481 0.2530 9.9 7fgi:B, 7fgi:C, 7fgi:D, 7fgi:E, 7fgi:F, 7fgi:G, 7fgi:H, 7fgi:I, 7fgi:J, 7fgi:K, 7fgi:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218