Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MRVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLSQDVPWKQRTGIREDITYQQPRLTAWYGELPYTYSRITM
EPNPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVCWHSDDEPSLGRSPIIASLSFGATRTFEMRKKPPPEENGD
YTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYP

The query sequence (length=211) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8jnr:A 211 211 1.0000 1.0000 1.0000 3.72e-160 2iuw:A, 8jnk:A, 8jnk:C, 8jnk:E, 8jnk:G, 8jnr:E, 8jnr:D
2 8jnr:C 184 211 0.8720 1.0000 0.8720 1.04e-129
3 3h8o:A 206 182 0.3223 0.3301 0.3736 4.40e-30 3btx:A, 3bty:A, 3btz:A, 3bu0:A, 3buc:A, 3h8r:A, 3h8x:A, 4mg2:A, 4mgt:A, 3rzg:A, 3rzh:A, 3rzj:A, 3rzk:A, 3rzl:A, 3rzl:D, 3rzm:A, 3s57:A, 3s5a:A
4 5ylb:A 187 56 0.0806 0.0909 0.3036 0.045 5yl6:A
5 5mza:B 186 46 0.0711 0.0806 0.3261 1.5
6 2g37:B 300 94 0.1185 0.0833 0.2660 4.4 2ekg:A, 2ekg:B, 2g37:A, 5m42:A
7 1cle:A 534 74 0.0853 0.0337 0.2432 4.6 1cle:B, 1llf:A, 1llf:B
8 5l3t:A 294 41 0.0664 0.0476 0.3415 8.6

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218