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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRVAIPAEDDRGIKSNVSKHFGRSRYFVFVDIEGEDVKNVEVVEVPFGDLPNFIKDHGAKIVLTYGIGRRAIEYFNSLGI
SVVTGVYGRISDVIKAFIGGKLKIDYDWKEK

The query sequence (length=111) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2yx6:C 112 114 0.9820 0.9732 0.9561 1.34e-70 2yx6:B
2 6qp7:A 620 60 0.1622 0.0290 0.3000 0.38 6qp7:B
3 6qp8:A 622 60 0.1622 0.0289 0.3000 0.84 6qp8:B, 8rmj:A
4 5koi:A 271 29 0.0991 0.0406 0.3793 1.6 5koi:B, 5koi:C, 5koi:D, 5koi:E, 5koi:F, 5koi:G, 5koi:H
5 8dbr:B 513 84 0.1982 0.0429 0.2619 2.2 8dbp:A, 8dbp:B, 8dbp:C, 8dbq:A, 8dbq:B, 8dbq:C, 8dbr:A, 8dbr:C, 8dbs:A, 8dbs:B, 8dbs:C, 8dbt:A, 8dbt:B, 8dbt:C, 8dbu:A, 8dbu:B, 8dbu:C, 8dbv:A, 8dbv:B, 8dbv:C, 8dbw:A, 8dbw:B, 8dbw:C, 3oaa:A, 3oaa:B, 3oaa:C, 3oaa:I, 3oaa:J, 3oaa:K, 3oaa:Q, 3oaa:R, 3oaa:S, 3oaa:Y, 3oaa:Z, 3oaa:a, 6oqr:C, 6oqr:B, 6oqr:A, 6oqs:C, 6oqs:B, 6oqs:A, 6oqt:C, 6oqt:B, 6oqt:A, 6oqu:C, 6oqu:B, 6oqu:A, 6oqv:C, 6oqv:B, 6oqv:A, 6oqw:C, 6oqw:B, 6oqw:A, 6pqv:C, 6pqv:B, 6pqv:A, 5t4o:A, 5t4o:B, 5t4o:C, 5t4p:A, 5t4p:B, 5t4p:C, 5t4q:A, 5t4q:B, 5t4q:C, 6wnq:C, 6wnq:B, 6wnq:A, 6wnr:C, 6wnr:B, 6wnr:A
6 3c46:A 1095 35 0.1351 0.0137 0.4286 3.5 3c2p:A, 3c2p:B, 3c3l:A, 3c3l:B, 3c46:B, 4ff1:A, 4ff1:B, 4ff2:A, 4ff2:B, 4ff3:A, 4ff3:B, 4ff4:A, 4ff4:B, 3q0a:A, 3q0a:B, 3q22:A, 3q22:B, 3q23:A, 3q23:B, 3q24:A, 3q24:B
7 6vcd:B 255 43 0.1441 0.0627 0.3721 3.8
8 8frn:G 297 50 0.1081 0.0404 0.2400 4.4
9 5kdv:A 891 26 0.0721 0.0090 0.3077 4.6 7jtv:B, 7jtv:A, 5kdw:A, 5kdw:B, 5kdx:A, 5kdx:B
10 8idf:A 459 51 0.1532 0.0370 0.3333 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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