Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MRTQWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGDIRLLTPVEGVEHEDNLIVRAARLLMKTAAD
SGRLPTGSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADVPVFVRGHAAFAEGVGEIL
TPVDPPEKWYLVAHPGVSIPTPVIFKDPELPRNTPKRSIETLLKCEFSNDCEVIARKRFREVDAVLSWLLEYAPSRLTGT
GACVFAEFDTESEARQVLEQAPEWLNGFVAKGVNLSPLHRAML

The query sequence (length=283) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1oj4:A 283 283 1.0000 1.0000 1.0000 0.0 1oj4:B, 8qc7:A, 8qc7:B, 8qcc:A, 8qcc:B, 8qcn:A, 8qcn:B, 8qco:A, 8qco:B, 2ww4:A, 2ww4:B
2 8ckh:A 281 280 0.8445 0.8505 0.8536 9.67e-173 8ckh:B
3 2v2q:B 270 253 0.3074 0.3222 0.3439 1.21e-26 2v2q:A, 2v2v:A, 2v2v:B, 2v2z:A, 2v2z:B, 2v34:A, 2v34:B, 2v8p:A, 2v8p:B, 2vf3:A, 2vf3:B
4 4dxl:A 304 184 0.2332 0.2171 0.3587 6.70e-24 4ed4:A, 4emd:A
5 3pye:A 301 160 0.2120 0.1993 0.3750 7.63e-22 3pyf:A, 3pyg:A
6 4hac:A 312 64 0.0742 0.0673 0.3281 0.002 4hac:B, 6mde:A, 6mdf:A, 6mdf:B
7 1clv:A 471 119 0.1166 0.0701 0.2773 0.25 1jae:A, 1tmq:A, 1viw:A
8 8eeg:B 440 52 0.0671 0.0432 0.3654 0.52 8eef:A, 8eef:B, 8eeg:A, 8eeh:A, 8eeh:B, 8eei:A, 8eei:B, 8eej:B, 8eej:A, 8eek:A, 8eek:B, 8eel:A, 8eel:B, 8eem:A, 8eem:B, 8een:B, 8een:A, 8eeo:A, 8eeo:B
9 7nyw:B 858 41 0.0601 0.0198 0.4146 1.3
10 7nyx:A 1467 43 0.0636 0.0123 0.4186 1.8 7nyx:B, 7nyz:A, 7nyz:B, 7nz0:B, 7nz0:A, 7nz2:A3, 7nz2:B3, 7nz2:A4, 7nz2:B4, 7nz2:A1, 7nz2:B1, 7nz2:A2, 7nz2:B2, 7nz3:A1, 7nz3:B1, 7nz3:A2, 7nz3:B2
11 3ahy:B 466 60 0.0707 0.0429 0.3333 3.2 3ahy:A, 3ahy:C, 3ahy:D
12 8dzv:A 235 29 0.0424 0.0511 0.4138 3.8
13 7nsh:BC 700 70 0.0707 0.0286 0.2857 7.1 7l20:w
14 3pty:A 284 55 0.0636 0.0634 0.3273 7.5
15 4wyw:A 479 92 0.0601 0.0355 0.1848 8.9 8c1n:A, 8c1n:B, 8c2p:A, 2d7s:A, 2e9r:X, 2e9t:A, 2e9t:D, 2e9z:A, 2ec0:A, 2ec0:D, 2f8e:X, 6gvy:A, 4iqx:A, 5jxs:A, 3klv:A, 3kmq:A, 3kms:A, 3kna:A, 3koa:A, 5n95:A, 3nl0:A, 3nma:A, 1wne:A, 4wyl:A, 4wzm:A, 4wzq:A, 4x2b:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218