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BioLiP
>protein
MRTLITGASGQLGIELSRLLSERHEVIKVYNSSEIQGGYKLDLTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKA
YKINAEAVRHIVRAGKVIDSYIVHISTDYVFDGEKGNYKEEDIPNPINYYGLSKLLGETFALQDDSLIIRTSGIFRNKGF
PIYVYKTLKEGKTVFAFKGYYSPISARKLASAILELLELRKTGIIHVAGERISRFELALKIKEKFNLPGEVKEVDEVRGW
IAKRPYDSSLDSSRARKILSTDFYTLDLDGMVV

The query sequence (length=273) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2ggs:A 273 273 1.0000 1.0000 1.0000 0.0 2ggs:B
2 1vl0:A 281 238 0.3223 0.3132 0.3697 2.24e-31 1vl0:B, 1vl0:C
3 5u9c:A 288 264 0.3187 0.3021 0.3295 7.61e-30 5u9c:C
4 1kc1:A 298 198 0.2821 0.2584 0.3889 8.18e-29 1kc3:A, 1n2s:A
5 3sc6:D 283 254 0.3223 0.3110 0.3465 1.06e-27 3sc6:A, 3sc6:B, 3sc6:C, 3sc6:E, 3sc6:F
6 8ctr:A 298 275 0.3407 0.3121 0.3382 3.84e-26 8ctr:B, 8ctr:C, 8ctr:D
7 2ydx:A 312 283 0.2784 0.2436 0.2686 2.44e-25 2ydx:C, 2ydx:B, 2ydx:D, 2ydx:E
8 4tqg:A 297 102 0.0952 0.0875 0.2549 2.42e-08
9 8gjb:A 320 290 0.2491 0.2125 0.2345 6.10e-08 8gjb:B
10 5k4w:C 321 290 0.2747 0.2336 0.2586 9.43e-08 5k4q:A, 5k4q:B, 5k4q:C, 5k4q:D, 5k4q:E, 5k4q:F, 5k4u:A, 5k4u:C, 5k4v:A, 5k4v:C, 5k4w:A, 5k4y:A, 5k4y:B, 5k4y:C, 5k4y:D, 5k4y:E, 5k4y:F, 5k50:A, 5k50:C, 5k50:E, 5k50:G, 5k50:I, 5k50:J, 5lc1:A, 5lc1:B, 5lc1:C, 5lc1:D, 5lc1:E, 5lc1:F
11 3a1n:A 315 291 0.3114 0.2698 0.2921 5.28e-07 3a1n:B, 3a4v:A, 3a4v:B, 3a9w:A, 3a9w:B, 3ajr:A, 3ajr:B
12 5z75:A 306 292 0.3040 0.2712 0.2842 1.57e-06 5z75:B, 5z75:D
13 2pk3:A 309 146 0.1429 0.1262 0.2671 1.57e-05 2pk3:B
14 7cgv:A 310 290 0.2821 0.2484 0.2655 3.84e-05 7cgv:B, 7cgv:C, 7cgv:D
15 6x3b:A 300 148 0.1465 0.1333 0.2703 1.60e-04 6x3b:B, 6x3b:C, 6x3b:D
16 7eps:A 310 293 0.2564 0.2258 0.2389 3.90e-04 7eps:B, 7eps:C, 7eps:D, 3wmx:A, 3wmx:B, 3wmx:C, 3wmx:D
17 2pzm:A 316 251 0.2454 0.2120 0.2669 5.51e-04 2pzk:A, 2pzk:B, 2pzl:A, 2pzl:B, 2pzm:B
18 6jyg:D 307 303 0.2601 0.2313 0.2343 0.001 6jyg:A, 6jyg:B, 6jyg:C, 6jyg:E, 6jyg:F
19 6zll:A 321 166 0.1648 0.1402 0.2711 0.001 6zl6:A, 6zl6:B, 6zla:A, 6zla:B, 6zla:C, 6zla:D, 6zld:A, 6zld:B, 6zlj:A, 6zlj:B, 6zlk:A, 6zlk:B, 6zlk:C, 6zlk:D, 6zll:B, 6zll:C, 6zll:D
20 2gn4:A 329 193 0.1722 0.1429 0.2435 0.001 2gn4:B, 2gn6:A, 2gn6:B, 2gn8:A, 2gn8:B, 2gn9:A, 2gn9:B, 2gna:A, 2gna:B
21 7yst:A 312 156 0.1465 0.1282 0.2564 0.001 7ys8:A, 7ys8:B, 7ys9:A, 7ys9:B, 7ysa:A, 7ysa:B, 7ysm:A, 7ysm:B, 7yst:B, 7ysy:A, 7ysy:B, 7yt0:A, 7yt0:B
22 8sk0:B 330 86 0.0952 0.0788 0.3023 0.002 8shh:A, 8shh:B, 8sk0:A
23 1rpn:D 322 180 0.1575 0.1335 0.2389 0.002 1rpn:A, 1rpn:B, 1rpn:C
24 1wvg:A 352 158 0.1319 0.1023 0.2278 0.003 1wvg:B
25 2hun:A 329 185 0.1722 0.1429 0.2541 0.004 2hun:B
26 6vo6:D 311 167 0.1575 0.1383 0.2575 0.004 6vo6:A, 6vo6:B, 6vo6:C, 6vo8:A, 6vo8:B
27 2z1m:A 338 183 0.1722 0.1391 0.2568 0.005 2z1m:D, 2z95:A, 2z95:D
28 7k3p:A 329 170 0.1502 0.1246 0.2412 0.005 7k3p:B
29 7epr:B 310 150 0.1355 0.1194 0.2467 0.006 7epr:A, 7epr:C, 7epr:D
30 4twr:A 325 145 0.1355 0.1138 0.2552 0.006 4wok:A
31 4ej0:A 330 149 0.1282 0.1061 0.2349 0.023 4ej0:B, 4ej0:C, 4ej0:D, 4ej0:E, 4ej0:F, 4ej0:G, 4ej0:H, 4ej0:I, 4ej0:J
32 3ehe:A 290 146 0.1538 0.1448 0.2877 0.044 3ehe:B
33 6bwc:C 327 151 0.1355 0.1131 0.2450 0.050 6bwc:A, 6bwc:B, 6bwc:D, 6bwc:E, 6bwc:F
34 6kv9:A 299 32 0.0476 0.0435 0.4062 0.084 6kvc:A
35 3sxp:D 314 163 0.1502 0.1306 0.2515 0.11 3sxp:A, 3sxp:B, 3sxp:C, 3sxp:E
36 5y1f:A 311 196 0.1722 0.1511 0.2398 0.11 5y1e:A, 5y1g:A
37 2yy7:A 312 153 0.1319 0.1154 0.2353 0.14 2yy7:B
38 2q1w:A 300 252 0.2198 0.2000 0.2381 0.18 2q1w:B, 2q1w:C
39 5u4q:A 321 175 0.1685 0.1433 0.2629 0.18
40 5u4q:B 304 180 0.1758 0.1579 0.2667 0.19
41 8du0:A 286 66 0.0916 0.0874 0.3788 0.23 7ll6:A
42 7us5:A 346 84 0.0916 0.0723 0.2976 0.25 7us5:B, 7us5:C, 7us5:D
43 4l4x:A 503 113 0.1136 0.0616 0.2743 0.39
44 5uzh:A 345 87 0.0989 0.0783 0.3103 0.59
45 4j2o:C 316 153 0.1502 0.1297 0.2680 0.67 4j2o:A, 4j2o:B, 4j2o:D, 4j2o:E, 4j2o:F
46 4id9:B 328 142 0.1209 0.1006 0.2324 0.97 4id9:A, 4idg:A, 4idg:B
47 3vvb:A 270 151 0.1429 0.1444 0.2583 1.1
48 3w1v:A 347 151 0.1429 0.1124 0.2583 1.1 4g5h:A, 3vvc:A, 3w1v:B
49 5bju:A 340 187 0.1538 0.1235 0.2246 1.2 5bju:B, 5bjv:A, 5bjv:B, 5bjw:A, 5bjw:B, 5bjx:A, 5bjx:B, 5bjy:A, 5bjy:B
50 1n7g:B 336 186 0.1795 0.1458 0.2634 1.3 1n7g:A, 1n7g:C, 1n7g:D, 1n7h:A, 1n7h:B
51 8jmr:A 171 84 0.0806 0.1287 0.2619 1.4
52 4zrn:A 309 159 0.1392 0.1230 0.2390 1.5 4zrm:A, 4zrm:B, 4zrn:B
53 3wmw:B 278 168 0.1538 0.1511 0.2500 1.8 3wmw:A
54 3rfv:A 265 155 0.1355 0.1396 0.2387 2.0 3rfv:B, 3rfv:C, 3rfx:A, 3rfx:B, 3rfx:C
55 6gsn:q 675 50 0.0586 0.0237 0.3200 2.1 8cah:q, 8cas:q, 6gsm:q, 8s8e:p, 4uer:c, 6zce:q, 6zu9:q
56 3jap:p 634 50 0.0586 0.0252 0.3200 2.4 6fyx:q, 6fyy:q
57 5vt6:A 245 87 0.0916 0.1020 0.2874 2.6 5vt6:B, 5vt6:C, 5vt6:D
58 3lu1:A 336 102 0.0879 0.0714 0.2353 3.4 3lu1:B, 3lu1:C, 3lu1:D, 3ru7:A, 3ru7:B, 3ru7:C, 3ru7:D, 3ru9:A, 3ru9:B, 3ru9:C, 3ru9:D, 3rua:A, 3rua:B, 3rua:C, 3rua:D, 3ruc:A, 3ruc:B, 3ruc:C, 3ruc:D, 3rud:A, 3rud:B, 3rud:C, 3rud:D, 3rue:A, 3rue:B, 3rue:S, 3rue:b, 3ruf:A, 3ruf:B, 3ruf:S, 3ruf:b, 3ruh:A, 3ruh:B, 3ruh:C, 3ruh:D
59 1bxk:B 344 87 0.0769 0.0610 0.2414 3.5 1bxk:A
60 8a22:Bu 167 37 0.0549 0.0898 0.4054 5.8 8apn:Bu
61 7ncf:A 355 67 0.0549 0.0423 0.2239 6.0 6p5s:A
62 1vm6:B 218 81 0.0842 0.1055 0.2840 6.2 1vm6:A, 1vm6:C, 1vm6:D
63 5in4:A 355 88 0.0989 0.0761 0.3068 6.8 6gpj:A, 6gpj:B, 6gpj:D, 6gpj:C, 6gpk:A, 6gpk:B, 6gpk:C, 6gpk:D, 6gpl:B, 6gpl:E, 6gpl:C, 6gpl:D, 5in4:B, 5in4:C, 5in4:D, 5in5:A, 5in5:B, 5in5:C, 5in5:D, 6q94:B, 6q94:A, 6q94:C, 6q94:E, 6q94:D, 6q94:F, 6q94:G, 6q94:H, 1t2a:A, 1t2a:D, 1t2a:B, 1t2a:C
64 5ep3:A 253 51 0.0623 0.0672 0.3333 8.7 5ep2:A, 5ep4:A
65 5nue:B 332 65 0.0623 0.0512 0.2615 8.7 5nue:A, 5nue:C, 5nuf:A, 5nuf:B, 5nuf:C
66 6uh2:B 255 79 0.0879 0.0941 0.3038 9.2 6uh2:A
67 8r3r:A 658 86 0.0952 0.0395 0.3023 9.5 8r3r:B, 8r3r:C, 8r3r:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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