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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MRTELLSKLYDDFGIDQLPHTQHGVTSDRLGKLYEKYILDIFKDIESLKKYNTNAFPQEKDISSKLLKALNLDLDNIIDV
SSSDTDLGRTIAGGSPKTDATIRFTFHNQSSRLVPLNIKHSSKKKVSIAEYDVETICTGVGISDGELKELIRKHQNDQSA
KLFTPVQKQRLTELLEPYRERFIRWCVTLRAEKSEGNILHPDLLIRFQVIDREYVDVTIKNIDDYVSDRIAEGSKARKPG
FGTGLNWTYASGSKAKKMQFKG

The query sequence (length=262) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1sa3:A 262 262 1.0000 1.0000 1.0000 0.0 1sa3:B, 1yfi:A, 1yfi:B
2 2cjb:B 495 117 0.1183 0.0626 0.2650 0.26 2cim:A, 2cim:B, 2cj9:A, 2cj9:B, 2cja:A, 2cja:B, 2cjb:A
3 8hkx:AS6E 105 62 0.0725 0.1810 0.3065 0.48 8hky:AS6E, 8hkz:AS6E, 8hl1:AS6E, 8hl2:AS6E, 8hl3:AS6E, 8hl4:AS6E, 8hl5:AS6E, 8wkp:AS6E, 8wq2:AS6E, 8wq4:AS6E
4 6z7o:A 110 69 0.0802 0.1909 0.3043 0.90
5 8bh7:c 208 78 0.0878 0.1106 0.2949 1.6 7aso:B, 7asp:k, 7bge:c, 8bh6:c, 8byv:c, 6fxc:Ac, 6fxc:Bc, 7kwg:c, 5li0:c, 5nd8:c, 5nd9:c, 5ngm:Ac, 7nhl:d, 7nhm:d, 8p2f:d, 8p2g:d, 8p2h:d, 7p48:c, 6s0x:c, 6s13:c, 5tcu:SB, 8y38:c, 8y39:c, 6yef:c
6 4pet:A 329 46 0.0611 0.0486 0.3478 2.1 4pet:B
7 5b2o:A 1455 151 0.1336 0.0241 0.2318 2.2 5b2p:A, 5b2q:A
8 5epl:B 58 48 0.0573 0.2586 0.3125 3.1 5epl:A
9 7uhy:D 288 164 0.1336 0.1215 0.2134 3.3
10 2epn:A 623 61 0.0802 0.0337 0.3443 3.3 2epn:B
11 1n04:A 683 57 0.0573 0.0220 0.2632 7.6 2d3i:A, 8fei:A, 1iej:A, 1iq7:A, 1nft:A, 1nnt:A, 1ovt:A, 8x3h:A
12 3zdu:A 297 51 0.0611 0.0539 0.3137 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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